Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01663 ATGATCCATTCTTCCTTGTTTGCAGCTTTTGCAGCCTCGGAAGCCATGCCTCATTCTAAAGGAGATACTCCCATGTTTTCAATGTTCTGTAGATGGAACCCCTTAAGATTGATCATTCAGGGGCTGCTATTGTTCTCATTGTTGAGGTTGAATTATGGGTCAACAGATCCTGATGTGGAAGGAGAAGCTTTGGTTGATTTGTTAGGGGCACTGAATGATTCCAATCATCAGATAACTGACTGGAATTACCATCTTGTAAGCCCTTGCTTTAGTTGGTCGCATATTACCTGCCGAAATGGAAATGTCATATCCTTGAGCTTGGGTTCATTAGGCTTTTCAGGATCTCTTTCTCCCTCAATTACCAAACTGAAGTATTTGGCCAGCCTGGATTTGCAGAACAATAATATAGCTGGTGTTCTACCAGATTATCTAGCTAACATGACCCACCTACAGAATTTGAATCTTGGTAATAATAACTTCAATGGGCCTATACCCGTGGCGTGGGGTCGACTTGTCGGTCTAAAACATCTGGATCTCTCAGATAACAATTTAACAGGAGAAGTTCCAGCGCAGTTCTTTTCAATTCCAATGTTCAACTTTTCAGGAACTGGTTTACCTTGTGGATTTAGGTTGGATAAACCTTGTGTTTCAACATCTCCCCATCGAGCTTCTGCTAAGAATTACAAGTTTGGGGTAGTGGCAAGTACTGCAAGTTGTGGAGGTTTCATACTTCTATCGATTGGTGCCTTCTTTGCTTACAGATGCTTCTACATGCATAAGCTTAAGGATTCTATGTTTGTTGATGTTGCTGATGAAGATGAATGTAAACTTTGCTTTGGGCAAATCAGAAGATTTTCATTGCGGGAAATCCAACTTGCTACCGCTAACTTTAATGAAGCGAACATCATTGGCCAAGGAGGCTTTGGAAAAGTATATAAAGGCATCCTCTCAGATGCCTCCAAGGTGGCTGTGAAACGGTTAACAGACTACAATAGTCCTGGCGGGAAGGCTGCATTCCTAGGAGAAGTTGAACTAATAAGTGTTGCGGTGCATAGAAATCTCCTACGGTTGATCGGGTTTTGCATAACCACATCTGAGAGAATCCTTGTTTATCCATTCATGCAGAATCTTAGTGTGGCACATCACTTGAGAGATTTAAAACCTGGAGAAAGAAGCTTGGAATGGGCCACAAGGAAACGAATTGCTTTTGGGGCAGCTCATGGTTTGGAGTATTTGCACGAGCACTGCAGTCCTAAGATCATTCATCGCGATCTGAAGGCTGCGAATATCTTATTAGATGATGACTTTGAAGCTGTTCTTGGAGATTTTGGGCTGGCTAAGCTAGTTGATACTAAAGTGACTCATATTACCACTCAAGTGCGTGGTACGATGGGTCACATTGCCCCAGAATATCTGTCCACAGGAAAGTCATCTGAAAAGACAGATGTTTTTGGATATGGTATCACCCTTCTTGAACTTGTTACTGGCCAGCGAGCAATAGATTTCTCCCGTCTCGAAGAGGAGGAAGATGTTCTTCTACTTGATCATATAAAGAAGCTGCAGAGGGAGAATAGGCTTGAAGATGTGGTGGACAAGAACTTAAAGAGCTATAACGAGAAAGAAGTCGAAAACATAGTTCAGGTGGCACTGCTTTGCACTCAAAGTTCACCAGAGGACCGGCCGACAATGGCTGAAGTTGTGAATCTGCTACATGGAGAAGGACTGGCAGATAGGTGGGCAGAGTGGATGCAGCTCGAAGAGGTAAGAGATCAGGAAGTGTCCCTCTTGTGTCACCAGTTTGTTTGGGGTGAGGAATCAAGTCATGATCAAGAAGCCATACAATTGTCTAAAGCCAGATAG 1860 43.06 MIHSSLFAAFAASEAMPHSKGDTPMFSMFCRWNPLRLIIQGLLLFSLLRLNYGSTDPDVEGEALVDLLGALNDSNHQITDWNYHLVSPCFSWSHITCRNGNVISLSLGSLGFSGSLSPSITKLKYLASLDLQNNNIAGVLPDYLANMTHLQNLNLGNNNFNGPIPVAWGRLVGLKHLDLSDNNLTGEVPAQFFSIPMFNFSGTGLPCGFRLDKPCVSTSPHRASAKNYKFGVVASTASCGGFILLSIGAFFAYRCFYMHKLKDSMFVDVADEDECKLCFGQIRRFSLREIQLATANFNEANIIGQGGFGKVYKGILSDASKVAVKRLTDYNSPGGKAAFLGEVELISVAVHRNLLRLIGFCITTSERILVYPFMQNLSVAHHLRDLKPGERSLEWATRKRIAFGAAHGLEYLHEHCSPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTKVTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLQRENRLEDVVDKNLKSYNEKEVENIVQVALLCTQSSPEDRPTMAEVVNLLHGEGLADRWAEWMQLEEVRDQEVSLLCHQFVWGEESSHDQEAIQLSKAR* 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15780377 15787372 - CsaV3_2G019780.1 Csa02g01663 519720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01663 619 PANTHER LRR RECEPTOR-LIKE KINASE 43 619 - -
Csa02g01663 619 Pfam Leucine rich repeat N-terminal domain 59 97 IPR013210 -
Csa02g01663 619 Gene3D Transferase(Phosphotransferase) domain 1 374 590 - -
Csa02g01663 619 Pfam Leucine rich repeat 126 184 IPR001611 GO:0005515
Csa02g01663 619 SMART serkin_6 297 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01663 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Csa02g01663 619 Pfam Protein kinase domain 298 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01663 619 SUPERFAMILY Protein kinase-like (PK-like) 278 570 IPR011009 -
Csa02g01663 619 ProSiteProfiles Protein kinase domain profile. 297 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01663 619 Gene3D Phosphorylase Kinase; domain 1 266 373 - -
Csa02g01663 619 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 43 619 - -
Csa02g01663 619 Gene3D Ribonuclease Inhibitor 57 215 IPR032675 -
Csa02g01663 619 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Csa02g01663 619 SUPERFAMILY L domain-like 61 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01663 Csa-Chr2:15780377 Csa04g00455 Csa-Chr4:2844273 0 dispersed
Csa04g00456 Csa-Chr4:2855703 Csa02g01663 Csa-Chr2:15780377 3.40E-103 dispersed
Csa04g00457 Csa-Chr4:2862038 Csa02g01663 Csa-Chr2:15780377 3.91E-32 dispersed
Csa02g01663 Csa-Chr2:15780377 Csa05g02551 Csa-Chr5:26917973 9.12E-164 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77903 PF00069 Pkinase 3.00E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01663 - - csv:101206877 1197.19