Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g01684 | ATGTTTGCTACTACTGGAGTTCTCTTCTTCATCTGGTTTCTGAGCTGCACTCTGCTTCCTCTTACCATGGCAACTTTCAACTTCAATCTCACTGTGCCAAATCTTCTACCAGATCCTGAGACTGTTGCTTATCAAGTTCAAAGGAGTGTGAATGATTCCTTTTTCAGAAGACAAATGTTGTCCATTCATTCAAAAGGACAATCCAATTCCTGTCAAACTGCAAACCCTATCGACGATTGTTGGCGTTGTGACTCAAACTGGCAAGCTAATCGCCAACGACTCGCCGATTGCGGCATTGGATTCGGCCGAGATGCCATGGGAGGGAAAGGAGGTCAGATCTACGTAGTTACAGATTCCTCCGATCCCGACCCTGTAAACCCTCGACCTGGAACTCTCCGTTACGCCGTGGTTCAAGATGAACCTCTTTGGATCGTCTTTGCTGCAGATATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGATGGCCGAGGCGCCAATGTCCACATTACCGGCGGCGGTTGCATCACACTCCAATACATCTCGAATGTAATCATCCACAACATCAACATCCACCACTGTGTCCCTACCGGTCACACCAACATCCGATCGTCCCCTACGCATGTCGGATACAGAGGAAAGTCCGACGGCGATGGAATATCGATCTTTAGCTCACGCAACATCTGGATCGACCATTGTTCTCTCTCGTACTGTACCGATGGCTTAATCGACGCCATAATGGGATCGACGGGAATCACGATCTCGAACAACTACTTCTCCCACCACGATGAGGTGATGTTGTTAGGGCACGACGATGGGTTCACGCCGGATTCAGGGATGCAGGTGACAATAGCTTTTAATTTGTTCGGGGAGAAGCTGGTTCAGAGAATGCCGCGGTGCCGACGGGGATACATTCACGTTGTAAACAACGATTTCCAATCGTGGGAGATGTACGCCATCGGCGGGAGTGGTAATCCGACGATCAACAGCCAAGGGAATCGGTATATTGCTCCAGGAAATCCCAATGCGAAGGAGGTGACGAAGCGCGTGGACACGAACGCGGGAGATTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATAATGGTAAACGGAGCGTTTTTTGTGCCTTCCGGCGAAGGACTCAGCAATATGTACGTTAAAGCTTCCAGTTTGCCGCCCAAATCCGCCGCTCTTGTCGACCAGCTCACTCTCAACGCCGGCGTCTTCGGTGGCTCCAGGGAGAACAGACAGAGCACCTCGTACCCTGGAGACGAAGCCTCCTCCAGCAGCTCAGGATCCAGTGGCAGCGATGGTGGTGGTGACTACTTTGGGATGATATTCGGCGGGGGTGGGATAAACAATGCACCACCGCCATCTCTTTCAGCTGTTAACATGATCATTCTAACCCTATTTACTGTCTACGATGCCTTATTATTAACATTGTCATTGTAG | 1470 | 50.07 | MFATTGVLFFIWFLSCTLLPLTMATFNFNLTVPNLLPDPETVAYQVQRSVNDSFFRRQMLSIHSKGQSNSCQTANPIDDCWRCDSNWQANRQRLADCGIGFGRDAMGGKGGQIYVVTDSSDPDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCITLQYISNVIIHNINIHHCVPTGHTNIRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGFTPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNDFQSWEMYAIGGSGNPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSLPPKSAALVDQLTLNAGVFGGSRENRQSTSYPGDEASSSSSGSSGSDGGGDYFGMIFGGGGINNAPPPSLSAVNMIILTLFTVYDALLLTLSL* | 490 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 16049973 | 16056691 | + | CsaV3_2G021070.1 | Csa02g01684 | 519741 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g01684 | 489 | PANTHER | PECTATE LYASE 18-RELATED | 5 | 434 | IPR045032 | GO:0030570 | |
Csa02g01684 | 489 | PANTHER | PECTATE LYASE | 5 | 434 | - | - | |
Csa02g01684 | 489 | MobiDBLite | consensus disorder prediction | 416 | 442 | - | - | |
Csa02g01684 | 489 | PRINTS | Pollen allergen Amb family signature | 97 | 114 | IPR018082 | - | |
Csa02g01684 | 489 | PRINTS | Pollen allergen Amb family signature | 121 | 146 | IPR018082 | - | |
Csa02g01684 | 489 | PRINTS | Pollen allergen Amb family signature | 157 | 173 | IPR018082 | - | |
Csa02g01684 | 489 | PRINTS | Pollen allergen Amb family signature | 221 | 242 | IPR018082 | - | |
Csa02g01684 | 489 | PRINTS | Pollen allergen Amb family signature | 301 | 320 | IPR018082 | - | |
Csa02g01684 | 489 | PRINTS | Pollen allergen Amb family signature | 323 | 342 | IPR018082 | - | |
Csa02g01684 | 489 | PRINTS | Pollen allergen Amb family signature | 365 | 389 | IPR018082 | - | |
Csa02g01684 | 489 | PRINTS | Pollen allergen Amb family signature | 394 | 417 | IPR018082 | - | |
Csa02g01684 | 489 | Gene3D | - | 74 | 416 | IPR012334 | - | |
Csa02g01684 | 489 | SMART | amb_all | 149 | 346 | IPR002022 | - | |
Csa02g01684 | 489 | Pfam | Pectate lyase | 157 | 338 | IPR002022 | - | |
Csa02g01684 | 489 | SUPERFAMILY | Pectin lyase-like | 75 | 414 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01684 | Csa-Chr2:16049973 | Csa03g01128 | Csa-Chr3:8895882 | 0 | dispersed | |
Csa06g02614 | Csa-Chr6:23007604 | Csa02g01684 | Csa-Chr2:16049973 | 0 | transposed | |
Csa02g01684 | Csa-Chr2:16049973 | Csa05g02772 | Csa-Chr5:28428196 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g01684 | K01728 | - | csv:101207535 | 967.607 |