Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01684 ATGTTTGCTACTACTGGAGTTCTCTTCTTCATCTGGTTTCTGAGCTGCACTCTGCTTCCTCTTACCATGGCAACTTTCAACTTCAATCTCACTGTGCCAAATCTTCTACCAGATCCTGAGACTGTTGCTTATCAAGTTCAAAGGAGTGTGAATGATTCCTTTTTCAGAAGACAAATGTTGTCCATTCATTCAAAAGGACAATCCAATTCCTGTCAAACTGCAAACCCTATCGACGATTGTTGGCGTTGTGACTCAAACTGGCAAGCTAATCGCCAACGACTCGCCGATTGCGGCATTGGATTCGGCCGAGATGCCATGGGAGGGAAAGGAGGTCAGATCTACGTAGTTACAGATTCCTCCGATCCCGACCCTGTAAACCCTCGACCTGGAACTCTCCGTTACGCCGTGGTTCAAGATGAACCTCTTTGGATCGTCTTTGCTGCAGATATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGATGGCCGAGGCGCCAATGTCCACATTACCGGCGGCGGTTGCATCACACTCCAATACATCTCGAATGTAATCATCCACAACATCAACATCCACCACTGTGTCCCTACCGGTCACACCAACATCCGATCGTCCCCTACGCATGTCGGATACAGAGGAAAGTCCGACGGCGATGGAATATCGATCTTTAGCTCACGCAACATCTGGATCGACCATTGTTCTCTCTCGTACTGTACCGATGGCTTAATCGACGCCATAATGGGATCGACGGGAATCACGATCTCGAACAACTACTTCTCCCACCACGATGAGGTGATGTTGTTAGGGCACGACGATGGGTTCACGCCGGATTCAGGGATGCAGGTGACAATAGCTTTTAATTTGTTCGGGGAGAAGCTGGTTCAGAGAATGCCGCGGTGCCGACGGGGATACATTCACGTTGTAAACAACGATTTCCAATCGTGGGAGATGTACGCCATCGGCGGGAGTGGTAATCCGACGATCAACAGCCAAGGGAATCGGTATATTGCTCCAGGAAATCCCAATGCGAAGGAGGTGACGAAGCGCGTGGACACGAACGCGGGAGATTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATAATGGTAAACGGAGCGTTTTTTGTGCCTTCCGGCGAAGGACTCAGCAATATGTACGTTAAAGCTTCCAGTTTGCCGCCCAAATCCGCCGCTCTTGTCGACCAGCTCACTCTCAACGCCGGCGTCTTCGGTGGCTCCAGGGAGAACAGACAGAGCACCTCGTACCCTGGAGACGAAGCCTCCTCCAGCAGCTCAGGATCCAGTGGCAGCGATGGTGGTGGTGACTACTTTGGGATGATATTCGGCGGGGGTGGGATAAACAATGCACCACCGCCATCTCTTTCAGCTGTTAACATGATCATTCTAACCCTATTTACTGTCTACGATGCCTTATTATTAACATTGTCATTGTAG 1470 50.07 MFATTGVLFFIWFLSCTLLPLTMATFNFNLTVPNLLPDPETVAYQVQRSVNDSFFRRQMLSIHSKGQSNSCQTANPIDDCWRCDSNWQANRQRLADCGIGFGRDAMGGKGGQIYVVTDSSDPDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCITLQYISNVIIHNINIHHCVPTGHTNIRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGFTPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNDFQSWEMYAIGGSGNPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSLPPKSAALVDQLTLNAGVFGGSRENRQSTSYPGDEASSSSSGSSGSDGGGDYFGMIFGGGGINNAPPPSLSAVNMIILTLFTVYDALLLTLSL* 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16049973 16056691 + CsaV3_2G021070.1 Csa02g01684 519741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01684 489 PANTHER PECTATE LYASE 18-RELATED 5 434 IPR045032 GO:0030570
Csa02g01684 489 PANTHER PECTATE LYASE 5 434 - -
Csa02g01684 489 MobiDBLite consensus disorder prediction 416 442 - -
Csa02g01684 489 PRINTS Pollen allergen Amb family signature 97 114 IPR018082 -
Csa02g01684 489 PRINTS Pollen allergen Amb family signature 121 146 IPR018082 -
Csa02g01684 489 PRINTS Pollen allergen Amb family signature 157 173 IPR018082 -
Csa02g01684 489 PRINTS Pollen allergen Amb family signature 221 242 IPR018082 -
Csa02g01684 489 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Csa02g01684 489 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Csa02g01684 489 PRINTS Pollen allergen Amb family signature 365 389 IPR018082 -
Csa02g01684 489 PRINTS Pollen allergen Amb family signature 394 417 IPR018082 -
Csa02g01684 489 Gene3D - 74 416 IPR012334 -
Csa02g01684 489 SMART amb_all 149 346 IPR002022 -
Csa02g01684 489 Pfam Pectate lyase 157 338 IPR002022 -
Csa02g01684 489 SUPERFAMILY Pectin lyase-like 75 414 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01684 Csa-Chr2:16049973 Csa03g01128 Csa-Chr3:8895882 0 dispersed
Csa06g02614 Csa-Chr6:23007604 Csa02g01684 Csa-Chr2:16049973 0 transposed
Csa02g01684 Csa-Chr2:16049973 Csa05g02772 Csa-Chr5:28428196 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01684 K01728 - csv:101207535 967.607