Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01712 ATGGAGAAACTTCCTTTCGCATTTGCCTTCTTTCTTGCTCTATCCAACTTCTTCTTCCTTTTTGTCAATGCATTTACCGCCTCGGGATGGGCTCCCGCCCATGCTACCTTCTATGGCGAGAGCGATGCCTCTGGAACAATGGGTGGAGCTTGTGGGTATGGAAACTTATACCAGACGGGTTACGGGACGAGGACAGCAGCGCTGAGCACAGCATTGTTCAACGACGGAGCATCGTGCGGTCAGTGTTTCAAGATCATATGCGATTACAAGACAGATCCACGGTGGTGCATTAAAGGAGCATCAGTGACGATAACAGCAACAAATTTCTGCCCACCAAACTACGCTCTACCAAACAACAATGGAGGGTGGTGTAACCCTCCGCTTAAGCATTTCGACATGGCTCAGCCTGCTTGGCAGAAGATCGGCATTTACAGGGGCGGAATCATCCCTGTCCTCTACCAAAGGGTTCCTTGCAAAAAGAGAGGAGGTGTAAGATTCACAGTGAATGGAAGAGATTATTTTGAACTTGTTCTAATAACCAACGTGGGAGGAGCGGGTGACATCAAGTCAGTGTCTATTAAAGGCTCTAAATCAAGCAATTGGACCCCAATGTCAAGGAATTGGGGGGCCAATTGGCAATCCAATTCCTATCTAAATGGCCAATCTTTGTCCTTCAAGGTCACCACAAGTGATGGGCAAGTCCAAGTTTTCAACAATGTTGTGCCTTCATCTTGGAGATTTGGCCAAACATTTGCCAGCAAGGTCCAATTCAGCTGA 777 47.49 MEKLPFAFAFFLALSNFFFLFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLKHFDMAQPAWQKIGIYRGGIIPVLYQRVPCKKRGGVRFTVNGRDYFELVLITNVGGAGDIKSVSIKGSKSSNWTPMSRNWGANWQSNSYLNGQSLSFKVTTSDGQVQVFNNVVPSSWRFGQTFASKVQFS* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16862254 16864708 + CsaV3_2G024320.1 Csa02g01712 519769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01712 258 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Csa02g01712 258 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Csa02g01712 258 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Csa02g01712 258 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Csa02g01712 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Csa02g01712 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Csa02g01712 258 Pfam Expansin C-terminal domain 164 242 IPR007117 -
Csa02g01712 258 Gene3D - 21 159 IPR036908 -
Csa02g01712 258 PANTHER EXPANSIN-A15 12 257 IPR002963 GO:0009664
Csa02g01712 258 SUPERFAMILY PHL pollen allergen 160 253 IPR036749 -
Csa02g01712 258 SMART dpbb_1 65 153 IPR007112 -
Csa02g01712 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Csa02g01712 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 163 IPR007112 -
Csa02g01712 258 Gene3D - 163 258 IPR036749 -
Csa02g01712 258 PANTHER EXPANSIN 12 257 - -
Csa02g01712 258 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Csa02g01712 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Csa02g01712 258 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Csa02g01712 258 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Csa02g01712 258 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Csa02g01712 258 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Csa02g01712 258 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Csa02g01712 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Csa02g01712 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Csa02g01712 258 Pfam Lytic transglycolase 65 153 IPR009009 -
Csa02g01712 258 SUPERFAMILY Barwin-like endoglucanases 18 181 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01712 Csa-Chr2:16862254 Csa05g00892 Csa-Chr5:6920508 6.29E-114 dispersed
Csa03g00625 Csa-Chr3:5430736 Csa02g01712 Csa-Chr2:16862254 1.34E-95 dispersed
Csa07g00436 Csa-Chr7:3137269 Csa02g01712 Csa-Chr2:16862254 9.03E-36 dispersed
Csa02g01712 Csa-Chr2:16862254 Csa05g02468 Csa-Chr5:26468526 2.07E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01712 - - csv:101216569 513.457