Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01727 ATGATGAACGGTCATGATACGGAGCCGTTGGTGTACGTTCACGGCGACCTTGATTTGAAGATCATTGAGGCGCGCCGTTTGCCTAATATGGATATGCTATCGGAACGTATTCGACGGTTTTTTACCGTTTTTACTTCTTGTCAGACACCGTTTTCCAAGAAAAAGGATAAGGAGGATCACCAGCATCGCCGGAAGATTATTACTAGTGATCCCTACGTTACCGTTTGTCTTGCTGGATCGACGGTTGCTCGGACACGAGTTATTTCGAATTCGCAGAACCCTGTCTGGAATGAGCACTTCAATATTCCTCTTGCTCATCCGGTCTCGCAGGTGGAGTTTCATGTCAAGGATAATGATGTGTTTGGTGCGGATTTGATTGGTATTGCAACGGTCCCTGCGCGTAGAGTTCTTTCTGGCGAAATCATTGATGATTGGTTTCCGCTTATCGGTTCGTTCGGGAAACCGCCGAAGCCGGATTCGGCTGTGCGTTTGGAAATGAAATTCACCAAGTGCGAGGACAATCCTCTGTACCGTTATGGCATTGCGGCCGATCCAGAACATTTTGGCGTTCGGAATTGCTATTTTCCGGTACGACATGGGGGTTCGGTAACGCTTTATCAGGACGCGCACGTTCCTGAGTCCATGTTGGAGAAGATTGAACTGGAAAAGGGGAATCTGTATCAACATGAGAATTGCTGGGAGGATATATGCCATGCGATTTTGGAGGCTCACCATTTAGTCTACATTGCCGGTTGGTCCATATATCATAAGGTGAAGCTTGTGAGAGAGCCTTCAAAGCCGTTGCCTAATGGTGGAAATTTGAATTTGGGAGAGTTGCTCAAGTACAAGTCACAAGAAGGGGTGCGAGTCTTGTTATTGGTTTGGGATGACAAGACTTCCCACAGCAAGTTCTTCATTAATACGACTGGAGTGATGCAGACTCATGATGAGGAGACCCGGAAGTTTTTCAAGCACTCTTCTGTGTCATGTGTTCTGTCACCCCGATATGCCAGCAGTAAGCTTAGCATTTTTAAGCAACAGGTCGTGGGAACGCTTTTCACCCATCACCAGAAGTGTGTGATTGTCGATACACAAGCATCTGGAAATTATCGGAAGATAACTTCTTTTATTGGAGGGCTCGACCTTTGCGATGGCCGTTACGATACTCCTGAGCACCGGTTGTTAAAAGATCTTGACACTGTATTTAATGAAGATTATCATAATCCAACCTTTTCCGGAGGTACAAAGGGTCCTCGGCAGCCATGGCATGATTTACATTGCAAAATTGAAGGGCCCGCGGCATATGATGTGCTTACTAACTTTGAACAACGATGGCGAAAAGCCACAAAATGGTCTGAATTGGGTCAGCGATTCAAAAGAGTATCACATTGGCATGAAGATGCTTTAATAAAGTTGGAACGCATATCTTGGATACTTAGTCCATCTCAATCAGTCCCCAACGACGATCCTTTGTTGTGGGTTTCCAAGGAAAATGATCCTGGCAACTGGCATGTTCAGGTTTTCCGATCCATAGATTCAGGATCTTTGAAAGGATTTCCCAAAGATGTCTTTCAAGCTGAGTTGCAGAATCTGGTTTGTGCAAAAAATTTGGTTATTGATAAAAGCATTCAAACAGCATATATTCAAGCAATAAGATCTGCCCAACACTTCATATACATTGAGAATCAGTATTTTCTTGGATCATCCTTTGCATGGCCTTCGTACAAAGAAGCAGGTGCTGATAATCTCATTCCTATGGAGTTGGCGTTGAAGATTGCTAGTAAGATAAGAGCCAATGAGAGGTTTGCTGTCTACGTTGTGATACCAATGTGGCCTGAAGGGGCTCCCTCTTCTGTTTCTGTGCAAGAAATCCTGTTTTGGCAGGGTCAGACAATCCAAATGATGTACGAAATCATTGGACGAGAGTTGAAATATAAGAATTTTGAGAACGCTCATCCCTCAGACTACTTAAACTTCTACTGTCTTGGCAATAGGGAACCACACGACGACTTGGCATGTTCCTCTGGTCATTCCTCCAAGAGTGAAGATTTGGTTTCAGACTCGCAAAAATTCCGTAGATTCATGATATATGTGCATGCGAAAGGAATGATTGTTGATGATGAGTATGTAGTAGTAGGGTCAGCAAATATAAATCAAAGATCAATGGCTGGATCAAGGGACACTGAGATTGCGATGGGTGCATATCAACCAAGTTACACATGGGGGAAGATGAAACGACATCCACGAGGCCAGGTTTACGGCTACAGAATGTCTCTCTGGGCTGAACATTTGGGAAACATTGACGATTGCTTCAAGGAGCCAGAAAGTTTAACTTGTGTAAAGACAGTCAACAAGATGGCTGAAGATAACTGGAAGAAATACACCGCGATGGAGTATGCGCCATTACAAGGGCACCTCCTAAAGTACCCGATTGAGGTCAGCCAAAGTGGGAAGATAGGTCCGTTGAGAGGACACGAGACTTTCCCTGACTTTGGTGGTAAGGTCCTCGGAGCTCGATCTAACCTCCCTGATGCTCTTACTACGTAA 2547 44.68 MMNGHDTEPLVYVHGDLDLKIIEARRLPNMDMLSERIRRFFTVFTSCQTPFSKKKDKEDHQHRRKIITSDPYVTVCLAGSTVARTRVISNSQNPVWNEHFNIPLAHPVSQVEFHVKDNDVFGADLIGIATVPARRVLSGEIIDDWFPLIGSFGKPPKPDSAVRLEMKFTKCEDNPLYRYGIAADPEHFGVRNCYFPVRHGGSVTLYQDAHVPESMLEKIELEKGNLYQHENCWEDICHAILEAHHLVYIAGWSIYHKVKLVREPSKPLPNGGNLNLGELLKYKSQEGVRVLLLVWDDKTSHSKFFINTTGVMQTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNYRKITSFIGGLDLCDGRYDTPEHRLLKDLDTVFNEDYHNPTFSGGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSELGQRFKRVSHWHEDALIKLERISWILSPSQSVPNDDPLLWVSKENDPGNWHVQVFRSIDSGSLKGFPKDVFQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSFAWPSYKEAGADNLIPMELALKIASKIRANERFAVYVVIPMWPEGAPSSVSVQEILFWQGQTIQMMYEIIGRELKYKNFENAHPSDYLNFYCLGNREPHDDLACSSGHSSKSEDLVSDSQKFRRFMIYVHAKGMIVDDEYVVVGSANINQRSMAGSRDTEIAMGAYQPSYTWGKMKRHPRGQVYGYRMSLWAEHLGNIDDCFKEPESLTCVKTVNKMAEDNWKKYTAMEYAPLQGHLLKYPIEVSQSGKIGPLRGHETFPDFGGKVLGARSNLPDALTT* 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16957629 16963831 + CsaV3_2G024470.1 Csa02g01727 519784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01727 848 Gene3D Endonuclease Chain A 522 740 - -
Csa02g01727 848 PANTHER PHOSPHOLIPASE D 9 847 IPR015679 -
Csa02g01727 848 PANTHER PHOSPHOLIPASE D 9 847 - -
Csa02g01727 848 SUPERFAMILY Phospholipase D/nuclease 540 779 - -
Csa02g01727 848 Gene3D Endonuclease Chain A 216 469 - -
Csa02g01727 848 PIRSF PLD_plant 2 848 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Csa02g01727 848 Pfam Phospholipase D Active site motif 352 386 IPR001736 GO:0003824
Csa02g01727 848 Pfam Phospholipase D Active site motif 695 721 IPR001736 GO:0003824
Csa02g01727 848 CDD C2_plant_PLD 11 169 - -
Csa02g01727 848 Pfam Phospholipase D C terminal 768 838 IPR024632 -
Csa02g01727 848 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 351 386 IPR001736 GO:0003824
Csa02g01727 848 SMART pld_4 351 386 IPR001736 GO:0003824
Csa02g01727 848 SMART pld_4 694 721 IPR001736 GO:0003824
Csa02g01727 848 Gene3D C2 domain 13 176 IPR035892 -
Csa02g01727 848 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 694 721 IPR001736 GO:0003824
Csa02g01727 848 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 170 IPR035892 -
Csa02g01727 848 SUPERFAMILY Phospholipase D/nuclease 227 457 - -
Csa02g01727 848 Pfam C2 domain 15 148 IPR000008 -
Csa02g01727 848 SMART C2_3c 16 145 IPR000008 -
Csa02g01727 848 ProSiteProfiles C2 domain profile. 1 146 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01727 Csa-Chr2:16957629 Csa06g03367 Csa-Chr6:28038914 0 dispersed
Csa02g01727 Csa-Chr2:16957629 Csa02g02386 Csa-Chr2:21161532 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01727 K01115 - csv:101213442 1742.24