Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01758 ATGGAACCACATTTTCTGTTTTCCATACCCCTTTTTCTTCTTTTCCCACTCCTCCATCTTGCTTCTGCTACGCTGTCTCCTTCTGGTGTTAACTTTGAAGTCGTAGCGTTGATGGCCATAAAATATGATTTATTAGATCCCCACAATGTTCTGGAGAACTGGGATTCTAATTCTGTGGATCCTTGCAGCTGGAGAATGGTCACCTGTTCTCCAGATGGATATGTTTCTGTTTTGGGGCTACCTAGCCAGAGTTTGTCCGGGGTCTTATCACCTGGGATTGGAAACCTCACCAAGTTGGAATCTGTGTTGCTTCAGAACAATGACATTTCAGGACCAATTCCTGCAACCATCGGAAAGTTAGAGAACCTCCAGACTCTTGATCTCTCCAACAATTTATTTAGTGGCCAAATACCCAGTTCCCTCGGAGACCTGAAGAAGCTGAATTATTTGCGACTGAATAACAACAGCCTAACTGGACCTTGTCCTGAATCTCTATCCAAAGTTGAAGGTCTCACGCTCGTGGACCTTTCATACAACAACTTGAGTGGCTCCTTACCCAAAATATCAGCAAGAACATTCAAGATTGTTGGTAACCCTCTGATCTGTGGTCCAAACAACTGTTCTGCTATCTTTCCAGAGCCATTGTCGTTTGCCCCAGATGCTCTTGAAGAAAATCTGGGGTTTGGTAAGAGCCACCGCAAGGCAATTGCTTTTGGGGCAAGTTTTAGTGCTGCATTTATTGTTTTAGTCCTTATTGGACTACTTGTCTGGTGGAGATACAGACACAACCAGCAGATTTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGGTTGGGTCATTTGAGAAGGTACACATTCAAGGAACTTAGGGCAGCAACTGATCACTTTAACCCTAAGAATATCTTGGGAAGAGGTGGGTTTGGAATTGTGTACAAGGGATGCTTAAATGATGGGAGTCTGGTAGCGGTTAAAAGGCTGAAGGATTATAACACAGCTGGTGGGGAGATCCAATTTCAGACTGAAGTAGAGATGATAAGCTTAGCTGTACACCGAAATCTCCTCAAGCTTTTTGGCTTTTGTTCTACTGAGAGCGAAAGACTTCTGGTTTACCCTTTCATGCCCAACGGCAGCGTTGGATCTCGTCTAAGAGATCGTATCCATGGGCAGCCGGCTCTAGATTGGGCAATGAGAAAGAGAATAGCCTTGGGCACAGCTAGGGGATTGGTATACTTGCACGAGCAGTGTGACCCCAAAATTATTCATCGTGATGTCAAGGCCGCCAACATTCTCCTTGATGAAGACTTCGAGGCCGTCGTAGGAGACTTTGGGTTGGCCAAACTTTTGGATCACAGGGATTCTCATGTTACTACAGCGGTGCGTGGCACTGTTGGCCATATTGCCCCAGAATACTTATCAACGGGCCAATCCTCAGAAAAGACTGATGTTTTTGGGTTTGGAATCTTGCTTTTGGAGTTGATTACTGGTCAGAAGGCTCTGGATTTTGGTCGAGGAGCAAACCAGAAAGGCGTGATGCTCGATTGGGTGAAAAAGTTGCATCAGGAAGGGAAGCTGAATATGATGGTGGATAAAGATCTAAAGGGTAACTTCGACAGAGTTGAGTTAGAGGAAATGGTCCAGGTTGCCCTGTTGTGCACTCAATTCAATCCTTCTCACCGACCCAAAATGTCTGAAGTGTTAAAAATGTTGGAAGGCGATGGTTTAGCTGAGAAATGGGAAGCATCACAGCACATTGAAACGCCAAGATGTCGACCGTGTGAGAATCCACCTCAACGGTACTCAGATTATATAGAAGAATCTTCTCTTATTGTAGAAGCGATGGAGCTTTCAGGCCCCAGATGA 1866 44.91 MEPHFLFSIPLFLLFPLLHLASATLSPSGVNFEVVALMAIKYDLLDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSVLGLPSQSLSGVLSPGIGNLTKLESVLLQNNDISGPIPATIGKLENLQTLDLSNNLFSGQIPSSLGDLKKLNYLRLNNNSLTGPCPESLSKVEGLTLVDLSYNNLSGSLPKISARTFKIVGNPLICGPNNCSAIFPEPLSFAPDALEENLGFGKSHRKAIAFGASFSAAFIVLVLIGLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNPKNILGRGGFGIVYKGCLNDGSLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLKLFGFCSTESERLLVYPFMPNGSVGSRLRDRIHGQPALDWAMRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVKKLHQEGKLNMMVDKDLKGNFDRVELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQHIETPRCRPCENPPQRYSDYIEESSLIVEAMELSGPR* 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17156879 17162137 + CsaV3_2G024780.1 Csa02g01758 519815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01758 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Csa02g01758 621 Gene3D Transferase(Phosphotransferase) domain 1 375 590 - -
Csa02g01758 621 PANTHER PROTEIN NSP-INTERACTING KINASE 3 12 621 - -
Csa02g01758 621 ProSiteProfiles Protein kinase domain profile. 298 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01758 621 SMART serkin_6 298 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01758 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 621 - -
Csa02g01758 621 Pfam Protein kinase domain 300 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01758 621 SUPERFAMILY Protein kinase-like (PK-like) 274 572 IPR011009 -
Csa02g01758 621 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Csa02g01758 621 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Csa02g01758 621 Gene3D Phosphorylase Kinase; domain 1 267 374 - -
Csa02g01758 621 Gene3D Ribonuclease Inhibitor 30 209 IPR032675 -
Csa02g01758 621 SUPERFAMILY L domain-like 32 192 - -
Csa02g01758 621 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00213 Csa-Chr1:1379747 Csa02g01758 Csa-Chr2:17156879 1.23E-103 dispersed
Csa02g01758 Csa-Chr2:17156879 Csa05g02551 Csa-Chr5:26917973 0 dispersed
Csa02g01758 Csa-Chr2:17156879 Csa05g03065 Csa-Chr5:30756982 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77904 PF00069 Pkinase 4.80E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01758 - - csv:101208885 1208.36