Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01760 ATGGAGGATAATATGTATGGCATGCCTAAGTCCTTCCTTCCACCCGACAATCTTATCCTTCCCCTCGATTACCAATCCTTGCTTTCTTCCTCCAACTACCGCCGCGATCCTATTCCTATGTTCGGATCTCATCAATTGCTTTCCCGCCCTACTTCCGCCATATCCCAAGCTGAACCACCTTCTACTACTACTCCCGATTTTCCGATCCCTCGAGAAGACCTTCTCAGCGTCACCAAGGCCAAAATTGTCTCTCATCCTACCTATCCTCGCCTGCTTCATGCTTATATTGACTGCCAGAAGGTTGGAGCTCCTCCGGAGGTAGCGTGCTTGTTGGAGGAAATCAGGCGAGAAAACGACAGTCAAGAACAAAACGGGATCTCCACGTGCTTCGGAGCCGATCCCGAGCTCGATGAGTTCATGGAAGCGTACTGTGACATGCTGGTGAAGTACAAATCAGATCTCTCAAGGCCCTTTCATGAAGCTTTCTCCTTCTTAAACAACATCCAACTGCAACTTTGCAACCTTGGCGCTCCTGCCTCCACTTCAACTCCTTCCAACGAGGATGCCATGTCATCAGATGATGAGCTTAACTGTGGTGAGAGAGAATTGCAAGATGGTCAAATGAGGTTAGAAGACAAAGGTCTCAAAGACATGCTCTTAAGTAGATTTGGCGGTCACATTGGTACCTTAAAGCTGGAATTTTCAAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGAAGGAAAGTACTGCTTGAGTGGTGGGATGTTCACTATAAATGGCCCTATCCCACGGAAGCTGATAAGGTCGCGCTGGCAGAGACAACAGGACTTGATCCCAAGCAAATTAACAATTGGTTTATTAATCAACGAAAGCGGCACTGGAAACCTTCTGAGAGTATGCAATTTGGAAATATGGACAATGCGGGTGAACAATTTTACGCTAGGCTTGACTCTTAA 960 46.46 MEDNMYGMPKSFLPPDNLILPLDYQSLLSSSNYRRDPIPMFGSHQLLSRPTSAISQAEPPSTTTPDFPIPREDLLSVTKAKIVSHPTYPRLLHAYIDCQKVGAPPEVACLLEEIRRENDSQEQNGISTCFGADPELDEFMEAYCDMLVKYKSDLSRPFHEAFSFLNNIQLQLCNLGAPASTSTPSNEDAMSSDDELNCGERELQDGQMRLEDKGLKDMLLSRFGGHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWDVHYKWPYPTEADKVALAETTGLDPKQINNWFINQRKRHWKPSESMQFGNMDNAGEQFYARLDS* 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17169389 17179678 + CsaV3_2G024800.1 Csa02g01760 519817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01760 319 SMART KNOX2_2 126 177 IPR005541 GO:0003677|GO:0005634
Csa02g01760 319 SMART ELK_2 214 235 IPR005539 GO:0003677
Csa02g01760 319 MobiDBLite consensus disorder prediction 49 68 - -
Csa02g01760 319 CDD homeodomain 248 298 IPR001356 GO:0003677
Csa02g01760 319 ProSiteProfiles 'Homeobox' domain profile. 234 297 IPR001356 GO:0003677
Csa02g01760 319 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 30 315 - -
Csa02g01760 319 Pfam KNOX1 domain 79 119 IPR005540 GO:0003677|GO:0005634
Csa02g01760 319 SUPERFAMILY Homeodomain-like 235 306 IPR009057 -
Csa02g01760 319 SMART HOX_1 236 301 IPR001356 GO:0003677
Csa02g01760 319 ProSitePatterns 'Homeobox' domain signature. 272 295 IPR017970 GO:0000981|GO:0006355
Csa02g01760 319 Gene3D - 233 306 - -
Csa02g01760 319 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 30 315 - -
Csa02g01760 319 Pfam KNOX2 domain 130 175 IPR005541 GO:0003677|GO:0005634
Csa02g01760 319 Pfam Homeobox KN domain 254 293 IPR008422 GO:0003677|GO:0006355
Csa02g01760 319 Pfam ELK domain 215 235 IPR005539 GO:0003677
Csa02g01760 319 SMART KNOX1_2 76 120 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00143 Csa-Chr1:865316 Csa02g01760 Csa-Chr2:17169389 4.94E-53 dispersed
Csa02g00505 Csa-Chr2:3550422 Csa02g01760 Csa-Chr2:17169389 1.72E-74 dispersed
Csa02g01760 Csa-Chr2:17169389 Csa04g02513 Csa-Chr4:24958037 1.58E-73 dispersed
Csa02g01760 Csa-Chr2:17169389 Csa05g02319 Csa-Chr5:25644124 1.27E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30964 PF03791 KNOX2 7.10E-22 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01760 - - csv:101210523 653.669