Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01763 ATGAAGACTGGATCCCCACTTAGGTTTTTGATTTCGATTGCTGCTCTTCTGTTACTTGATTCATCCACCTTGGCAGACCCCAGATCCCGAACCGTGAAGATACTATGTTCGACAGTGCTAGAGCACAACACAACTGCCTTCGTGCCCAATTTCGTGAGAACAATGCAACTAATAAGTGACCAAATGCGAACTGGTGGGTTTGGAGTGGCAGTTGCGGGTAAGGGGCCGGACGCTAACTACGGACTCGCTCAATGTTACGGAGATTTGTCGCTGATGGATTGCGTGTTGTGTTATGCGGAAGCCCGTACTGTTCTTCCTCAATGCTTCCCTTACAACGGCGGCCGGATTTTCCTGGATGGCTGCTTCATGAGGGCTGAGAACTACAGCTTTTATGAAGAATTTGCAGGGCCTCTTGACAGGGCTGAGTGTGGTAACAACTCCATCACCAACTCCATTTTTCGACAGTCGGCCAGGCAAGCTGTGGCTCGAGCAATTGAAACTGCACCCAGCAATGGCGGGTATGCCAGAATTCAAGTGGCTCCACCTGGAACCTCCAATGCCTCCGTTTACCTGTTGGCTCAGTGCTGGAGGAATTTGAATCGCACCTCCTGCACTTCCTGTTTGCAAAACGCCTCTGCTTCTATCTTGAAATGCTTGCCTCGATCCGAAGCAAGAGCCCTCAACACAGGTTGCTTCATGAGATACTCTAATCTTGATTTCTTAAATGCGGAAGCTTCAGCTTCAAGGTCAAGGGGTACTATTATAGAAATTGTAGTCTCACTGGTGAGCTCTGTTGCTGTTTTAGTCGTTGGAGTGTTAATTGGAATCTATGTCTGGAATAACAGATATGTAAAGAAGAAACGAAGAGGTTCAAACGATGCAAACAAGATGGCAAAAACACTAAACAATAGTAGCTTGAATTTCAAGTACTCTACCCTTGAAAAGGCAACGGGATCCTTTGCTGAGGCTAACAAGCTTGGACAAGGAGGATTTGGCACTGTTTATAAGGGAGTTCTGTCGGATGGAAGAGAGATAGCTGTGAAGAGGCTTTTCTTCAATAACAAACATAGAGCAGCAGATTTTTACAATGAAGTAAACATAATCAGTAGTGTAGAGCACAAAAATTTAGTACGCTTGCTTGGTTGTAGTTGTTCGGGACCTGAAAGTCTGCTTGTCTATGAATACCTTGCCAACAAGAGTCTGGACCGCTTCATTTTCGATCGGGATAGAGGTAAAGCACTCAATTGGGAGAAGAGATATGATATTATTGTAGGAACAGTTGAAGGTCTGGCTTACCTTCATGAGAACTCGAAAAACAAGATCATTCACAGAGACATCAAGGCTAGCAACATCCTGCTAGACTCCAAGCTTCGAGCCAAAATAGCTGATTTTGGATTAGCTAGATCATTTGAAGAAGACGAGAGTCACATCAGCACTGCCATTGCAGGAACATTGGGATACATGGCACCAGAGTACTTAGCTCATGGGCAGCTAACAGACAAAGCAGATGTGTATAGTTTTGGTGTGGTTTTGCTGGAGACTGTGACTGGCATACAAAACAGTAGAAGCAAAACCTCAGACTACTTGGAAAGCATAGTACTAATTGTATGGAGGCATTTTCAATCAGGAACAATTGAAAGTATATTGGATGCGAACCTTATGGTTGAGGAAGATAGGAGCACAAAAGAGGAAATATTGAGAGTGGTGCAGATAGGGCTTCTTTGCACACAGGAGAGTGCATCTCTCCGACCCGCAATGTCGAAGGTACTGCAGATGCTGATGAAGAAGGAAGAGGAACTTCCGACGCCAACAAACCCACCGTTCATGGATGAGAGGACAATGGAATTAAACGACAGCAGTGAGGACCCATCATGCTTCAACCTCACCGAAGCTTCTTCCTCAGCTGCTACCGTCACCCATAGTTCATTTCATCCCAGGTAA 1941 45.34 MKTGSPLRFLISIAALLLLDSSTLADPRSRTVKILCSTVLEHNTTAFVPNFVRTMQLISDQMRTGGFGVAVAGKGPDANYGLAQCYGDLSLMDCVLCYAEARTVLPQCFPYNGGRIFLDGCFMRAENYSFYEEFAGPLDRAECGNNSITNSIFRQSARQAVARAIETAPSNGGYARIQVAPPGTSNASVYLLAQCWRNLNRTSCTSCLQNASASILKCLPRSEARALNTGCFMRYSNLDFLNAEASASRSRGTIIEIVVSLVSSVAVLVVGVLIGIYVWNNRYVKKKRRGSNDANKMAKTLNNSSLNFKYSTLEKATGSFAEANKLGQGGFGTVYKGVLSDGREIAVKRLFFNNKHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLANKSLDRFIFDRDRGKALNWEKRYDIIVGTVEGLAYLHENSKNKIIHRDIKASNILLDSKLRAKIADFGLARSFEEDESHISTAIAGTLGYMAPEYLAHGQLTDKADVYSFGVVLLETVTGIQNSRSKTSDYLESIVLIVWRHFQSGTIESILDANLMVEEDRSTKEEILRVVQIGLLCTQESASLRPAMSKVLQMLMKKEEELPTPTNPPFMDERTMELNDSSEDPSCFNLTEASSSAATVTHSSFHPR* 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17186289 17188842 - CsaV3_2G024830.1 Csa02g01763 519820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01763 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Csa02g01763 646 Gene3D Transferase(Phosphotransferase) domain 1 396 605 - -
Csa02g01763 646 CDD STKc_IRAK 326 595 - -
Csa02g01763 646 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 9 625 - -
Csa02g01763 646 ProSiteProfiles Protein kinase domain profile. 320 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01763 646 ProSiteProfiles Gnk2-homologous domain profile. 29 130 IPR002902 -
Csa02g01763 646 MobiDBLite consensus disorder prediction 599 623 - -
Csa02g01763 646 Gene3D Phosphorylase Kinase; domain 1 280 395 - -
Csa02g01763 646 Pfam Protein kinase domain 321 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01763 646 ProSiteProfiles Gnk2-homologous domain profile. 135 240 IPR002902 -
Csa02g01763 646 Gene3D - 140 240 IPR038408 -
Csa02g01763 646 Gene3D - 29 130 IPR038408 -
Csa02g01763 646 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 9 625 - -
Csa02g01763 646 SMART serkin_6 320 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01763 646 Pfam Salt stress response/antifungal 146 237 IPR002902 -
Csa02g01763 646 Pfam Salt stress response/antifungal 45 128 IPR002902 -
Csa02g01763 646 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Csa02g01763 646 SUPERFAMILY Protein kinase-like (PK-like) 305 625 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01763 Csa-Chr2:17186289 Csa05g02318 Csa-Chr5:25639895 4.25E-168 dispersed
Csa02g01762 Csa-Chr2:17182714 Csa02g01763 Csa-Chr2:17186289 1.63E-29 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77906 PF00069 Pkinase 3.30E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01763 - - csv:101210276 1242.25