Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01777 ATGAGTGGAATTGATCTTCGATTTAGCCTCTCCTCTTGTTGCCTGAAGAGGAAAAGACCCGCCAACATTCAGATCCCTACCCTGTTGCAGCCTCAGGAGATTCATCCCCACAAACTTGATCAAGATGCCACTCCCCCAACTCATTCCTTCTCTTCCACTGATTTTGCAGATCATGTGGGGGTTTTCTCCGTCAAGGGCAAGAAGAGGTTCATGGAAGATACTCACAAGATCATTCCTTGCTTGAAAGGCCACTTAAATAATGCCTTTTTTGGCGTTTATGATGGCCATGGAGGTAGGAAGGCAGCGACATTTGTTGCAGATAATTTGCACAATAACATACTTGAAGTGGTGGCCAATTGCATGGGATCTGCAAATAAGGAGGATGCTGTTAAAGCTGCTTTCTTGAAAACGGACCAAAACTTCTTGAATCTGGGTTTAGGCAGTGGTGTCTGCTGTGTCACAGCTCTGATACAAGGAGAAGAAGTTATTATTTCCAATTTGGGAGATTGTAGGGCTGTTCTTTCTAGAGGTGGAGTAGCTGAAGCAGTAACTAAAGACCATAGAGTTGAACAGGAGGATGAGCGTAAAAGAATAGAAAACAAGGGTGGATATGTTGAGATTCATAGGGGGGCATGGAGAGTTCATGGAGTTCTTTCTGTCTCTAGAAGCATTGGTGATGCTCATTTGAAGGACTGGGTGATTGCAGAGCCTGATTCAAAGATCCTGCTTATTAGTGAAGACATGGAATTTCTAGTTCTGGCCACTGATGGGCTATGGGAAAAGGTGGAAAACCAAGAGGCTATTGATGTTGTGACGCGATCGCGATTGATGGATCAAAGTTTTGGGCTATCAAAAGGTTCCTTGAGAAGCATTAGTCATAATTGTTGCTCTGTAAATCCAAGTGCATCAAAAGTACGGAAAGTTTCATTAGTCACGCAACCAAAAGTGGGGGTGGGCCAATCTTCAATCTGTGAGAAGCCAATGGAAAGCTGTGAAGAAGGTGAATATGACTATGCTTGCGAAATTGAAAGTCCTGGATCGAAATCAAGGAGAATATCATTGGTCAGACATAAAAAGATGAAGGTAGAATTTTCACCTAAGGAGAATAAGGATTGTTATAGGAAGATACCAACCTCCAGTAGACTTGTGGCTGCTTGTAAGGAACTTGTAAATCTAGCTCTGAGTAGGGGTAGTCTGGATGACATTACTGTAATGGTAATCGACTTGAAATACTTTAGGTGCAAGAGTCGATCTGAGAGTTCTTGTAACCTGTAA 1275 42.75 MSGIDLRFSLSSCCLKRKRPANIQIPTLLQPQEIHPHKLDQDATPPTHSFSSTDFADHVGVFSVKGKKRFMEDTHKIIPCLKGHLNNAFFGVYDGHGGRKAATFVADNLHNNILEVVANCMGSANKEDAVKAAFLKTDQNFLNLGLGSGVCCVTALIQGEEVIISNLGDCRAVLSRGGVAEAVTKDHRVEQEDERKRIENKGGYVEIHRGAWRVHGVLSVSRSIGDAHLKDWVIAEPDSKILLISEDMEFLVLATDGLWEKVENQEAIDVVTRSRLMDQSFGLSKGSLRSISHNCCSVNPSASKVRKVSLVTQPKVGVGQSSICEKPMESCEEGEYDYACEIESPGSKSRRISLVRHKKMKVEFSPKENKDCYRKIPTSSRLVAACKELVNLALSRGSLDDITVMVIDLKYFRCKSRSESSCNL* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17244608 17247513 + CsaV3_2G024970.1 Csa02g01777 519834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01777 424 SUPERFAMILY PP2C-like 48 410 IPR036457 -
Csa02g01777 424 ProSitePatterns PPM-type phosphatase domain signature. 89 97 IPR000222 GO:0043169
Csa02g01777 424 CDD PP2Cc 58 275 IPR001932 -
Csa02g01777 424 PANTHER PROTEIN PHOSPHATASE 2C 7 413 IPR015655 GO:0004722|GO:0006470
Csa02g01777 424 SMART PP2C_4 48 407 IPR001932 -
Csa02g01777 424 Gene3D - 47 416 IPR036457 -
Csa02g01777 424 Pfam Protein phosphatase 2C 58 276 IPR001932 -
Csa02g01777 424 ProSiteProfiles PPM-type phosphatase domain profile. 58 409 IPR001932 -
Csa02g01777 424 PANTHER PROTEIN PHOSPHATASE 2C 14-RELATED 7 413 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01777 Csa-Chr2:17244608 Csa05g00829 Csa-Chr5:6160066 1.16E-69 dispersed
Csa02g01777 Csa-Chr2:17244608 Csa03g02203 Csa-Chr3:19119262 1.29E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01777 - - csv:101209288 838.565