Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01779 ATGTCAAAACCCTGGGGTGGAATCGGAGCCTGGGCCGCTGATGCCGAGCGTGCTGAGGCTGAGGAACGGGAGGCACAAGCTGCTGCGGCTGCCTCCCAATCTGAATCCAAGAATTTCCCTAGCCTTAGGGAAGCTGTTAGCACCAAGCCCAAGAAGAAGAAGATGTCTCTCTCGGAATTCACTATGGGAACCCTCACCGGTCCTGGCACCGGAGGTAGGCTAACGGACACCCAGGGCTTGACTCCGGAGGAAATGATTCGCCTTCCAACTGGTCCTAAAGACCGCTCTGGTGAGGAAGTGCGTTCTGGCCGCCTCGGTGGGGGATTTCCTACTTATGATCGCCAAGGTATGTCTGCTGGCCGATTTCGAGACCGTGATGAAGGCGATGGCTCCTGGGGTGGTGGTCGACGGTCGTATGGTGGCTTCGACGAGGAACGCAGAGGTCCATCTTCTAGGGCTTCTAATTTTGATCAACCTTCCAGGGCTGACGAGGTGGATAATTGGGCAATGACGAAGAAATCTCCCACATTGGATTCGGGTCGACAGAATAGGTATGGGTCGTTAGGCGGTGGCGTGGGTGGGATTGCATCTAGGGCAGACGAGGTCGATAACTGGGCGAGTGTCAAAAAGCCTATCCCATCGAGATCCTCCACATTTGGTTCTGGTTATCGTGAGGCGAACGAGCCTGATCGCTGGGGTAGAGGCCGTTCGCGTGATAGTGACACAGAACGACCCCGATTAGTATTGGATCCACCCAAAGGCAATGTCGCTACAAATGAAGCAACCAGGACAAACAAGCCAAGTCCTTTTGGAGCAGCAAGGCCGAGAGAGGAGGTTTTGGCTGAGAAAGGGTTGGATTGGAAGAAGTTGGATACAGAAATTGAGGCCAAAAGAACCAGTAGGCCAACCAGTGCTCACTCTAGCAGGCCTTCGAGTGCTCAATCCAGCCGTTCGGAGGGTCCAGGATTACAGGGCCTAGAAAATGTGGCGAAGCCGAGGCCAAAAGTCAATCCATTTGGGGATGCCAAACCTAGGGAAGTTCTGCTGGAGGAACGTGGCAAGGACTGGCGAAAGATAGATCTGCAACTCGAGCATCGTGCTGTTGACAGGCCTGAAACAGAAGAGGAAAAGATGTTGAAAGAGGAAATTGATGTCCTAAGAAAGGAACTTGAGGAAGGGTTATCTCTGAATGCTAACAAAGAATCAGTGCAAGAATCTGCTGGAGAGATGCAAAATCTGCGTGACAGAATTAATAAAAAAGAACATGAACTGGAGACGCTGGTCCTTGATTTGGATGACAAAGTTCGCTTTGGAAAGAAAGCCACTGAAAGACCCGGCTCTGGAGCGGGCAGGGCTGCCGTCTTTCCAGAAAGACCTGGCTCTGGAGCAGGTAGGGCCACTGTCTTTCCAGAAAGACCGCCTTCTCAAGGATCCTTTGACGAGTCCAGAAGTTTTGAATCTGTAGATAGACCTCGATCACGTGGCACCGCAGATGTATGGAGTAGACCCGCTGATGATAGAAAACCAATTCAAGGTGCCAGAGATAGAGGGTTTTTGGGCAACAGAGACATGGAGAGGTCGAGGGATAGATGGTAA 1596 52.01 MSKPWGGIGAWAADAERAEAEEREAQAAAAASQSESKNFPSLREAVSTKPKKKKMSLSEFTMGTLTGPGTGGRLTDTQGLTPEEMIRLPTGPKDRSGEEVRSGRLGGGFPTYDRQGMSAGRFRDRDEGDGSWGGGRRSYGGFDEERRGPSSRASNFDQPSRADEVDNWAMTKKSPTLDSGRQNRYGSLGGGVGGIASRADEVDNWASVKKPIPSRSSTFGSGYREANEPDRWGRGRSRDSDTERPRLVLDPPKGNVATNEATRTNKPSPFGAARPREEVLAEKGLDWKKLDTEIEAKRTSRPTSAHSSRPSSAQSSRSEGPGLQGLENVAKPRPKVNPFGDAKPREVLLEERGKDWRKIDLQLEHRAVDRPETEEEKMLKEEIDVLRKELEEGLSLNANKESVQESAGEMQNLRDRINKKEHELETLVLDLDDKVRFGKKATERPGSGAGRAAVFPERPGSGAGRATVFPERPPSQGSFDESRSFESVDRPRSRGTADVWSRPADDRKPIQGARDRGFLGNRDMERSRDRW* 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17252709 17257111 - CsaV3_2G024990.1 Csa02g01779 519836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01779 531 Pfam Plant specific eukaryotic initiation factor 4B 457 517 IPR010433 GO:0003743
Csa02g01779 531 Pfam Plant specific eukaryotic initiation factor 4B 1 459 IPR010433 GO:0003743
Csa02g01779 531 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B1 1 531 - -
Csa02g01779 531 MobiDBLite consensus disorder prediction 59 77 - -
Csa02g01779 531 MobiDBLite consensus disorder prediction 29 43 - -
Csa02g01779 531 MobiDBLite consensus disorder prediction 303 322 - -
Csa02g01779 531 MobiDBLite consensus disorder prediction 227 248 - -
Csa02g01779 531 Coils Coil 15 35 - -
Csa02g01779 531 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 531 IPR010433 GO:0003743
Csa02g01779 531 MobiDBLite consensus disorder prediction 1 346 - -
Csa02g01779 531 MobiDBLite consensus disorder prediction 118 132 - -
Csa02g01779 531 MobiDBLite consensus disorder prediction 439 531 - -
Csa02g01779 531 MobiDBLite consensus disorder prediction 276 302 - -
Csa02g01779 531 Coils Coil 403 430 - -
Csa02g01779 531 MobiDBLite consensus disorder prediction 483 531 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01360 Csa-Chr2:13099403 Csa02g01779 Csa-Chr2:17252709 1.69E-32 dispersed
Csa02g01779 Csa-Chr2:17252709 Csa07g00084 Csa-Chr7:796525 2.54E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01779 - - csv:101206526 948.347