Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g01789 | ATGGAAAATTCCAATTCTGTTGTGATTATGATGAGTATAAAGTTATTAGTATTGAGTATTGTTATGCTCCAAATGAGCTCCATGTCATCGTCTTCTCCAGTCCCCGATCCTGATTTAGTCGCCCAAGAAGTTCTTACGAGCATCAACAATGCAACAATAACAAGAAGGAATTTGGGGTTCCTATCCTGTAAAACTGGCAACCCGATAGACGACTGCTGGCGTTGCGATGCCAATTGGGAAAAGAACCGAAAGAAGCTAGCCGACTGCGCCATTGGGTTTGGAAAACGAGCCATCGGCGGCAAAAACGGCAAATACTACATCGTGACTGACCCATCCGACAATGACGTGGTGAACCCAAAACCGGGCACACTCCGGCACGCCGTAATCCAAAAAGAACCCTTATGGATCACCTTCAAGCGCGACATGGTCATCAAATTAAAAGCAGAGCTTCTGATGAACTCTTTCAAAACCATCGACGGGCGTGGCGTCTCCGTCCACATCGCCGGAGGGCCTTGCATTACCATTCAATTTGTGACCAACATTATAATCCACGGCATTAACATTCACGATTGCAAGCAAGGTGGGAACACTTACGTGAGAGACTCGCCGGAGCATTACGGTTGGAGGACGGTGTCAGACGGGGATGGGATATCTATATTTGGAGGAAGCCATGTTTGGATTGACCATTGCTCTTTGTCGAATTGCCGAGATGGGTTGATTGATGCGATTCATGGATCGACGGCTATTACTGTTTCAAACAATTACATGACTCATCATAACAAAGTTATGCTTTTAGGACACAGTGATTCCTATACTCAAGATAAGAACATGCAAGTCACCATTGCTTTTAACCATTTCGGTGAAGGCCTTGTTCAAAGAATGCCACGGTGTCGCCACGGATATTTCCATGTGGTAAATAATGACTATACTCATTGGATAATGTATGCCATTGGTGGAAGTGCATCTCCTACTATCAATAGCCAAGGAAATAGATACCTTGCTCCTAATAACCAAAATAGCAAAGAGGTGACAAAACGAGAGGATACACCCCAAAGCAGGTGGAAGAATTGGAATTGGAGATCAGATGGAGATTTGATGTTGAATGGAGCATTCTTCGTAAGGTCCGGGGCTGGAGCATCGTCTAGCTATGCAAGAGCATCCAGCTTGAGTGCTAAGTCCTCCTCGCTAATCAATTCGATCACGGCAGGAGCTGGAGTGTTGAAATGTCGAAAAGGGTCTCGATGCTAG | 1248 | 45.35 | MENSNSVVIMMSIKLLVLSIVMLQMSSMSSSSPVPDPDLVAQEVLTSINNATITRRNLGFLSCKTGNPIDDCWRCDANWEKNRKKLADCAIGFGKRAIGGKNGKYYIVTDPSDNDVVNPKPGTLRHAVIQKEPLWITFKRDMVIKLKAELLMNSFKTIDGRGVSVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTVSDGDGISIFGGSHVWIDHCSLSNCRDGLIDAIHGSTAITVSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPNNQNSKEVTKREDTPQSRWKNWNWRSDGDLMLNGAFFVRSGAGASSSYARASSLSAKSSSLINSITAGAGVLKCRKGSRC* | 416 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 17302889 | 17305199 | - | CsaV3_2G025090.1 | Csa02g01789 | 519846 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g01789 | 415 | SUPERFAMILY | Pectin lyase-like | 56 | 410 | IPR011050 | - | |
Csa02g01789 | 415 | SMART | amb_all | 141 | 338 | IPR002022 | - | |
Csa02g01789 | 415 | Gene3D | - | 66 | 408 | IPR012334 | - | |
Csa02g01789 | 415 | PANTHER | PECTATE LYASE 18-RELATED | 16 | 412 | IPR045032 | GO:0030570 | |
Csa02g01789 | 415 | PRINTS | Pollen allergen Amb family signature | 89 | 106 | IPR018082 | - | |
Csa02g01789 | 415 | PRINTS | Pollen allergen Amb family signature | 113 | 138 | IPR018082 | - | |
Csa02g01789 | 415 | PRINTS | Pollen allergen Amb family signature | 149 | 165 | IPR018082 | - | |
Csa02g01789 | 415 | PRINTS | Pollen allergen Amb family signature | 213 | 234 | IPR018082 | - | |
Csa02g01789 | 415 | PRINTS | Pollen allergen Amb family signature | 293 | 312 | IPR018082 | - | |
Csa02g01789 | 415 | PRINTS | Pollen allergen Amb family signature | 315 | 334 | IPR018082 | - | |
Csa02g01789 | 415 | PRINTS | Pollen allergen Amb family signature | 357 | 381 | IPR018082 | - | |
Csa02g01789 | 415 | PRINTS | Pollen allergen Amb family signature | 386 | 409 | IPR018082 | - | |
Csa02g01789 | 415 | Pfam | Pectate lyase | 176 | 330 | IPR002022 | - | |
Csa02g01789 | 415 | PANTHER | PECTATE LYASE | 16 | 412 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01789 | Csa-Chr2:17302889 | Csa05g01868 | Csa-Chr5:21944533 | 0 | dispersed | |
Csa01g00913 | Csa-Chr1:5694974 | Csa02g01789 | Csa-Chr2:17302889 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g01789 | K01728 | - | csv:101208076 | 791.186 |