Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01789 ATGGAAAATTCCAATTCTGTTGTGATTATGATGAGTATAAAGTTATTAGTATTGAGTATTGTTATGCTCCAAATGAGCTCCATGTCATCGTCTTCTCCAGTCCCCGATCCTGATTTAGTCGCCCAAGAAGTTCTTACGAGCATCAACAATGCAACAATAACAAGAAGGAATTTGGGGTTCCTATCCTGTAAAACTGGCAACCCGATAGACGACTGCTGGCGTTGCGATGCCAATTGGGAAAAGAACCGAAAGAAGCTAGCCGACTGCGCCATTGGGTTTGGAAAACGAGCCATCGGCGGCAAAAACGGCAAATACTACATCGTGACTGACCCATCCGACAATGACGTGGTGAACCCAAAACCGGGCACACTCCGGCACGCCGTAATCCAAAAAGAACCCTTATGGATCACCTTCAAGCGCGACATGGTCATCAAATTAAAAGCAGAGCTTCTGATGAACTCTTTCAAAACCATCGACGGGCGTGGCGTCTCCGTCCACATCGCCGGAGGGCCTTGCATTACCATTCAATTTGTGACCAACATTATAATCCACGGCATTAACATTCACGATTGCAAGCAAGGTGGGAACACTTACGTGAGAGACTCGCCGGAGCATTACGGTTGGAGGACGGTGTCAGACGGGGATGGGATATCTATATTTGGAGGAAGCCATGTTTGGATTGACCATTGCTCTTTGTCGAATTGCCGAGATGGGTTGATTGATGCGATTCATGGATCGACGGCTATTACTGTTTCAAACAATTACATGACTCATCATAACAAAGTTATGCTTTTAGGACACAGTGATTCCTATACTCAAGATAAGAACATGCAAGTCACCATTGCTTTTAACCATTTCGGTGAAGGCCTTGTTCAAAGAATGCCACGGTGTCGCCACGGATATTTCCATGTGGTAAATAATGACTATACTCATTGGATAATGTATGCCATTGGTGGAAGTGCATCTCCTACTATCAATAGCCAAGGAAATAGATACCTTGCTCCTAATAACCAAAATAGCAAAGAGGTGACAAAACGAGAGGATACACCCCAAAGCAGGTGGAAGAATTGGAATTGGAGATCAGATGGAGATTTGATGTTGAATGGAGCATTCTTCGTAAGGTCCGGGGCTGGAGCATCGTCTAGCTATGCAAGAGCATCCAGCTTGAGTGCTAAGTCCTCCTCGCTAATCAATTCGATCACGGCAGGAGCTGGAGTGTTGAAATGTCGAAAAGGGTCTCGATGCTAG 1248 45.35 MENSNSVVIMMSIKLLVLSIVMLQMSSMSSSSPVPDPDLVAQEVLTSINNATITRRNLGFLSCKTGNPIDDCWRCDANWEKNRKKLADCAIGFGKRAIGGKNGKYYIVTDPSDNDVVNPKPGTLRHAVIQKEPLWITFKRDMVIKLKAELLMNSFKTIDGRGVSVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTVSDGDGISIFGGSHVWIDHCSLSNCRDGLIDAIHGSTAITVSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPNNQNSKEVTKREDTPQSRWKNWNWRSDGDLMLNGAFFVRSGAGASSSYARASSLSAKSSSLINSITAGAGVLKCRKGSRC* 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17302889 17305199 - CsaV3_2G025090.1 Csa02g01789 519846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01789 415 SUPERFAMILY Pectin lyase-like 56 410 IPR011050 -
Csa02g01789 415 SMART amb_all 141 338 IPR002022 -
Csa02g01789 415 Gene3D - 66 408 IPR012334 -
Csa02g01789 415 PANTHER PECTATE LYASE 18-RELATED 16 412 IPR045032 GO:0030570
Csa02g01789 415 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Csa02g01789 415 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Csa02g01789 415 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Csa02g01789 415 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Csa02g01789 415 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Csa02g01789 415 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Csa02g01789 415 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Csa02g01789 415 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Csa02g01789 415 Pfam Pectate lyase 176 330 IPR002022 -
Csa02g01789 415 PANTHER PECTATE LYASE 16 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01789 Csa-Chr2:17302889 Csa05g01868 Csa-Chr5:21944533 0 dispersed
Csa01g00913 Csa-Chr1:5694974 Csa02g01789 Csa-Chr2:17302889 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01789 K01728 - csv:101208076 791.186