Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01790 ATGGCTTCCATTTCACCTTACCGCCCAAACTTTGTGTTCTCTTCATTTCCTAGTCGTGTTCCCAACTCAAATCCTCTATTTCATGGAGTCCAATTCCGAGGCTTATCCCATCATAAGCCTTTCCTTCGCGGTTCTCTTGCTGTGGCGAGATTTGGGTTTAAACCCGAGTTCTTGCCTGACCCGGATAACGCCGAGGGCTTTGTTAGAGATTTGTTTGGCAAAGCTGAGAGCTTTCTTTACACGATTGCCGACGCCGCCGTGTCTGCTTCGCCGGATAATGTTACTACCGTCAAGCAGACGGATGATTGGTTTACGGGGATTACCAATTATATGGAGAGCGTCCTTAAAATTCTTAAGGATGGACTTTCTACTTTACATGTTCCTTATGCCTATGGCTTTGCCATTATACTTCTTACAGTTCTTGTTAAGGCTGCTACGTTTCCTTTGACAAAGAAGCAGGTAGAATCTGCAATGGCGATGCGTTCTTTGCAACCCCAAGTGAAGGCTGTTCAACAACGCTATGCTGGGGATCAGGAGAGGATTCAACTTGAGACTGCTCGACTGTACAAATTAGCAGGCATAAACCCACTAGCAGGATGCCTACCCACGTTGGCAACAATTCCTGTATGGATTGGACTATACAGAGCTCTTTCAAATGTGGCCAATGAGGGTCTCCTCACGGAAGGTTTTTTCTGGATACCCTCTCTGGCTGGTCCAACTACGATTGCCTCCCGACAAAATGGGAGTGGTATTTCTTGGCTCTTTCCATTTGTTGATGGTCATCCTCCACTTGGGTGGTCAGATACCTTTGCGTATCTTGTTTTGCCTGTGTTGCTGGTCGTTTCGCAGTACATCTCTGTTCAAATTATGCAATCGTCGCAGAATAATGATCCGAGCATGAAGAGTTCTCAAGCCATAACGCAGTTCCTACTGTTAATGATTGGATATTTTGCACTTTCAGTTCCTTCTGGTCTAAGTCTTTATTGGCTTACCAATAACATCTTGAGCACAGCTCAGCAAGCATGGCTTCAAAAGGCAGGTGGCGCAAAAACCCTGGACAAACAGTTCATTGATGAAATCATGAAACAAGAAGAAAAACAAGTCCGAGTCCAGAGTGAAGCGCCCAAGTTAAACTCAATATCAAGTAGCACCGTAGCTCGTCAAGAGGAGAAGCCGACAGCAGAAGGGCTAAAGCCTGGTGAAAGATTTAAACGGTTAAAGGAGCAAGAGGCTAGGTTAAGACAGCAAAGAGAGGAAGAAGAAAGGAAAGCGGAAGAGTCTGCCAAGGCTGAATCTCTGACTGTAAATGACGGCGACAAGAGCGCAACTGTTGGAGTTGTTGTCAATGGTAGTCTTTCCAGGCAGGATGTAAAGGAGGATCAGAACTCCATACCCACGACTACTATGCAAAGAGTCGATGTGGATAGTGAGCCAAGTGCAACTCAGGGAGAGGGAGTGCTCGAGACATACACTAGGGTGGCCAAGGATGCCAAACTAAACGGAGAAGAACAAAGAGAGTAA 1521 46.02 MASISPYRPNFVFSSFPSRVPNSNPLFHGVQFRGLSHHKPFLRGSLAVARFGFKPEFLPDPDNAEGFVRDLFGKAESFLYTIADAAVSASPDNVTTVKQTDDWFTGITNYMESVLKILKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQVKAVQQRYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVQIMQSSQNNDPSMKSSQAITQFLLLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKAGGAKTLDKQFIDEIMKQEEKQVRVQSEAPKLNSISSSTVARQEEKPTAEGLKPGERFKRLKEQEARLRQQREEEERKAEESAKAESLTVNDGDKSATVGVVVNGSLSRQDVKEDQNSIPTTTMQRVDVDSEPSATQGEGVLETYTRVAKDAKLNGEEQRE* 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17308421 17313541 - CsaV3_2G025100.1 Csa02g01790 519847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01790 506 Coils Coil 403 433 - -
Csa02g01790 506 MobiDBLite consensus disorder prediction 368 437 - -
Csa02g01790 506 TIGRFAM yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 131 345 IPR028055 -
Csa02g01790 506 MobiDBLite consensus disorder prediction 452 506 - -
Csa02g01790 506 MobiDBLite consensus disorder prediction 372 389 - -
Csa02g01790 506 MobiDBLite consensus disorder prediction 391 433 - -
Csa02g01790 506 MobiDBLite consensus disorder prediction 452 486 - -
Csa02g01790 506 Pfam 60Kd inner membrane protein 131 345 IPR001708 GO:0016021|GO:0032977
Csa02g01790 506 PANTHER OXA1 73 428 IPR001708 GO:0016021|GO:0032977
Csa02g01790 506 PANTHER BNAA09G28180D PROTEIN 73 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02395 Csa-Chr1:21246901 Csa02g01790 Csa-Chr2:17308421 1.20E-140 dispersed
Csa02g01790 Csa-Chr2:17308421 Csa04g00657 Csa-Chr4:4407865 9.32E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01790 K03217 - csv:101205346 953.355