Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01797 ATGGAAAATGGCTTCTCTTCTCCTCGAAGCGATGTGTTTCCTATCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCTTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTGACTACATGTTGTTTGGCAAGGGAGGCTCTGAGCTTGCTTAGGGAGAGAAAAGATGGATATGATATTGTAATCAGCGACGTCAACATGCCCGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCGGTTGACGGAGAAACAAGTAGAGTGATGAAAGGGGTTCAACACGGTGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATATGGCAACACGTATTGCGAAAGAAGATACAAGAGGGAAGAGATATTGAAGGGCATGATGTTATTGAAGGGATCCACATACTAAGAAATGTGGCAGATAGATACGATGATAGCCAGTTCCTCAGGGGAGAGGAACCGTTTTCAGTGAGGAAACGAAAAGATATTGATAAGCATGAGGACAAAGACTTTTGTGACACTTCTTCCACAAAGAAAGCAAGGGTTGTTTGGTCAGTTGAATTGCACCAGAAATTTGTAAAAGCAGTAAACCAGATAGGCTTTGACAAAGTTGGTCCTAAAAAGATACTTGATCTCATGAATGTCCCTTGGCTAACTAGGGAAAATGTAGCTAGCCACTTGCAGAAATACCGCCTCTATTTGAGTCGGCTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGGATGAAACCTAAAGATTCGTGTTCGAAGGATGGAGATGGAAACTTCGGCCTTCGTAGTTCCTTAGCCGTGCCACAAAATGATGTCACAAACAGCAGCTTTAGCTTTTCAGGTGATAACTTCCTGCTACAGAATGTAGATTCCATAGGCTGTGAAGTTGATAGGAAAAGGATTGTTCAAGAGCATACAACAGAGCCAAAAAGAGCTGCTAGTAGGAGTGTTCCTGAACCAATAAAGACGCGGTGTCCGCAGATGAAATTCAACAACACTATTCACATTGTTGAACCTGAAGGGAAGTTTGCAGCATTTGATCCAAGCAACCGAAGCTGTTACCCTTGGGTTGAAGCTCCCGAAATCAAGTTCAAACAAGAAAGCAAGCCAATCGTGCATTTAGAAGGAGTCAATCAATTCCCTCCAACGGTTCCACCACGCCAAGTTCAAATGGACCAACTACAATCGATTTCGTCCATTAGTTCTGGAAGGTCAGCAACAGAGAAAGATATAGCAAGCTCCATTGAAAGTAAGCCTCCATATTCTGAAAACTGTAGCCAACAGAGGGTCCATTTAAATCTACCAAAAACACCAACTGATTCATTTGCTGGGAAGGCAAAGAGTTTCAACGAGATGAATGATCATTTTGATCCCAATTCAACTACAACAACTCCATTGGGCAAAAACCAGAATTTCAATCCTAGCTGCATTTCAACTGGTTTAGGAAGCGGGTTACCTTTTGCAACCATTGATGAAGACTTGCAGGGCTTTTTGCTTCAAGATGGATGCTACCCAAAGAACCTTGAACATCAGATTATAGAGTTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGTTCCTACTCACCTTTACGATGCAATGAGGTTTGGCTACGATTATTCCTATGACCCAACTGAGTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 1752 42.07 MENGFSSPRSDVFPIGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVIEGIHILRNVADRYDDSQFLRGEEPFSVRKRKDIDKHEDKDFCDTSSTKKARVVWSVELHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKPKDSCSKDGDGNFGLRSSLAVPQNDVTNSSFSFSGDNFLLQNVDSIGCEVDRKRIVQEHTTEPKRAASRSVPEPIKTRCPQMKFNNTIHIVEPEGKFAAFDPSNRSCYPWVEAPEIKFKQESKPIVHLEGVNQFPPTVPPRQVQMDQLQSISSISSGRSATEKDIASSIESKPPYSENCSQQRVHLNLPKTPTDSFAGKAKSFNEMNDHFDPNSTTTTPLGKNQNFNPSCISTGLGSGLPFATIDEDLQGFLLQDGCYPKNLEHQIIEFPDYGDPGIFTEVPTHLYDAMRFGYDYSYDPTEYPVIDEGLFIA* 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17338517 17341760 + CsaV3_2G025170.1 Csa02g01797 519854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01797 583 CDD REC_typeB_ARR-like 19 133 - -
Csa02g01797 583 PIRSF RR_ARR_type-B 1 516 IPR017053 GO:0003677|GO:0003700|GO:0009736
Csa02g01797 583 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Csa02g01797 583 SUPERFAMILY CheY-like 16 141 IPR011006 -
Csa02g01797 583 MobiDBLite consensus disorder prediction 423 448 - -
Csa02g01797 583 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Csa02g01797 583 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 488 - -
Csa02g01797 583 SMART REC_2 17 129 IPR001789 GO:0000160
Csa02g01797 583 Gene3D - 17 168 - -
Csa02g01797 583 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Csa02g01797 583 Gene3D - 194 257 - -
Csa02g01797 583 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Csa02g01797 583 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Csa02g01797 583 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 488 IPR045279 GO:0009736
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01797 Csa-Chr2:17338517 Csa06g01765 Csa-Chr6:15531730 3.76E-97 dispersed
Csa05g00009 Csa-Chr5:54545 Csa02g01797 Csa-Chr2:17338517 3.73E-23 dispersed
Csa02g01797 Csa-Chr2:17338517 Csa03g01497 Csa-Chr3:11108956 8.55E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30966 PF00072 Response_reg 1.20E-24 CL0304 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01797 - K14491 csv:101204370 1169.07