Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01808 ATGTACCTGTCTGATAAGCCTCGCCCAATTGATATTTACAAGGAAGAAGGTAGCAGAGATATGTTGATCGAGGTAGCCTCCAATGGCGACCACCATATTCAACCTCATCAGCCACAGCCACAGCCACAACAGACTCATCAGCAGCACCAAATGATGCTTGGTGATAGCAGTGGTGAGGATCATGAAGTCAAGGCTCCTAAGAAGCGAGCGGAGACTTGGGTTCAAGACGAGACTCGAAGCTTAATTGCTCTACGTAGGGAGATGGATGGTTTGTTTAATACCTCGAAATCCAACAAGCATTTGTGGGAGCAGATATCGACTAAGATGAGGGAAAGGGGATTTGATCGCTCCCCGACTATGTGTACTGATAAGTGGAGGAACTTGCTTAAGGAGTTCAAGAAAGCAAAGCACCATGACAGGGGAAGTGGCTCTGCTAAGATGTCGTGTTACAAGGAGATTGAAGAAATATTGAAGGAAAGAAGCAAGAGTACGCAGTACAAAAGCCCCACGCCACCCAAGATTGATTCATATATGCAATTCTCAGATAAAGGAATAGAGGATAATGGTCTATCGTTCGGACCTGTTGAAGGTGGCAGGCCTTCACTCAATCTTGAAAGACAACTAGATCACGATGGACATCCCCTTGCCATCACAGCAGCCGATGCAGTTGCTGCAACAGGCATTCCACCTTGGAATTGGAGAGAGGCACCTGGAAATGGTGGGGAGAGTCAGGCATTTGGAGGGAGAGTAATATCAGTGAAGTGGGGGGATTACACCAGAAGAATTGGTGTTGATGGCACCGCAGAGGCAATCAAGGAGGCAATCAAGTCTGCATTCGGGTTGAGAACTAAACGTGCATTTTGGTTAGAGGATGAGGACCAGGTTGTCAGAAGTCTGGACAGGGACATGCCTTTAGGAAACTACACTCTTCACCTTGACGAAGGTGTGGCTGTTAAAATCTGCCTCTATGATGAATCTAACCACTTACCAGTACATTCTGAAGACAAAGTTTTTTACATTGAAGAAGATTATCGAGATTTTTTAGCTCGTCGAGGCTGGACAAGCCTACGGGAGTTTGATGGGTATAGAAACATCGATAATATGGATGATCTTCGTTCTGGTGCATTATACCGTAGAAACATCGATAACATGGATGATCTCCGTCCTGGTGCAATATACCGTGGTGTAAGCTGA 1194 45.81 MYLSDKPRPIDIYKEEGSRDMLIEVASNGDHHIQPHQPQPQPQQTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISTKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSCYKEIEEILKERSKSTQYKSPTPPKIDSYMQFSDKGIEDNGLSFGPVEGGRPSLNLERQLDHDGHPLAITAADAVAATGIPPWNWREAPGNGGESQAFGGRVISVKWGDYTRRIGVDGTAEAIKEAIKSAFGLRTKRAFWLEDEDQVVRSLDRDMPLGNYTLHLDEGVAVKICLYDESNHLPVHSEDKVFYIEEDYRDFLARRGWTSLREFDGYRNIDNMDDLRSGALYRRNIDNMDDLRPGAIYRGVS* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17395198 17399206 + CsaV3_2G025280.1 Csa02g01808 519865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01808 397 ProSiteProfiles Myb-like domain profile. 65 129 IPR001005 -
Csa02g01808 397 MobiDBLite consensus disorder prediction 32 54 - -
Csa02g01808 397 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 5 378 - -
Csa02g01808 397 SMART sant 69 131 IPR001005 -
Csa02g01808 397 CDD GT1 71 136 - -
Csa02g01808 397 Pfam Myb/SANT-like DNA-binding domain 72 156 IPR044822 -
Csa02g01808 397 MobiDBLite consensus disorder prediction 55 72 - -
Csa02g01808 397 MobiDBLite consensus disorder prediction 26 72 - -
Csa02g01808 397 Gene3D - 73 135 - -
Csa02g01808 397 PANTHER - 5 378 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01808 Csa-Chr2:17395198 Csa06g00402 Csa-Chr6:3437451 1.20E-08 dispersed
Csa02g01808 Csa-Chr2:17395198 Csa03g03064 Csa-Chr3:28871011 3.78E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30967 PF13837 Myb_DNA-bind_4 3.10E-20 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01808 - - csv:101222888 775.007