Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01820 ATGGATATTTCCGAGGTTGAAGAAAATCTTTTTGCTGCGAGTGATGCCAAGCTACATCGAGGAATGTGCAAGACTCTTTCTGCACTATATTGTAAAGTATTATCAATTTTCCCTTCATTGGAAGCTGCACGACCTCGGAGCAAGTCTGGTATCCAGGCATTATGTTCTTTGCATGTAGCACTTGAAAAGGCCAAGAATACTCTCCAACATTGTACAGAGAGCAGCAAACTTTACTTGGCTATAACCGGGGACTCTGTCCTGTTAAAGTTTGAGAAGGTAAAAAGTGCTCTACAAGATAGCCTTAAACGTGTCGAAGATATTGTTCCACAGTCAATTGGCTATCAGGTTCAGGAGATTATGAAGGAGCTGGGGAGCACTCAATTTTTCCTCGATCCTTTAGAGAAGCAAGTTGGTGATGACATTATTTTATTGCTCCAACAGGGACGAACATTTAACAACGCCGTTGACAACAATGAGCTTGAGGCTTTTCACCAAGCTGCTACTAAACTTGGAATAAACTCCTCAAGAGCAGCTCTTGCAGAAAGAAGAGCACTAAAGAAACTAATTGACCGGTCTCGCACTGAAGACGACAAGAGGAAGGAATCAATCGTAGCTTATCTTTTGCATCTCATGAGGAAGTATTCCAAGTTATTTAGAACCGAAGTATCGGATGACAATGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGGGCTCTCTTGATGACAGTGGAGCTGGTGGAAATGGTCAAGCCTTTGAAAGGCAACTAACAAAGATTGGTTCTTTTACTTTGAAGCCAAAAATTCGCAAATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAACTTATGTATGATCCGGTCATAATTGCTTCTGGGCAAACATATGAAAGGATTTGCATTGAGAAGTGGTTAAATGATGGCCATAACACCTGCCCGAAAACTCAACAGAAACTCTCTCATCTTTCATTGACACCGAATTTCTGTGTCAAGGGCCTGATTGCAAACTGGTGTGAACAGTATGGAGTGCCTGTTCCTGATGGACCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTCGCATTATCTGAAGAGTCTCTAGATTTGTCACCTGTGGACTCTGTTGGTTCATGTAAGTTGAAAGATGTTAAAGTTGTTCCAGTAGATGAAAATAGTGTAACTGAGGAGATCAAAGGAAATGAGGTGGATGACAACTCTGCTGAAGACGAAGAGTCCAACGTGAATATGCTCGCTAGGCATGAACAGTATTTGAAAGTCTTAAATGACGAAGTTGACATGAAGAAAAAGTCGGCGATGGTGGAGCAAATTAGGCTGTTGCTCAAGGATGATGAAGAGGCGAGGATATCTATGGGAGCTAATGGGTTTGTCCAGGGACTTCTACGGTACTTAGAGATAGCTGTGCAAGAACAAAATACCAAGGCTCAAGAAAGTGGAGCAATGGCTCTTTTCAATCTTGCTGTCAACAACGATAGGAACAAGGAAATAATGCTGGCAGAAGGGGTAATTTCACTGTTGGAGGATATGATTATGAACCCAAATTCGCATGGATATGCAACGGCCCTCTATCTCAACGTCTCCTGTCTGGAAGAAGCAAAATCTATTATCGGCTCAAGTTGTGCGGTCCCTTTCTTAACTCAACTCCTCCACGCCAATACCGAAACACTATGCAAGCTCGATGCACTTCACACACTTTACAATCTCTCAACTGTACCCTCCAATATTCCCAACCTGATTTCTTCTGGAATCATCAAGGGACTTCAAGCCCTCCTTGCAGCCCGGCTCGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTTCAACTGAATCAGGTAGAGATCAAATGTCATCCACTCCAGAACTCATCAGTGGGTTGGCTGCAATATTAGACAATGGCGAACCCATTGAGCAGGAACAGGCAGTGGCTTGTCTCTTGATTTTGTGCAATGGGAACGAGAGGTGCAGTGAGATGGTCCTTCAGGAAGGCGTAATTCCTGGCTTGGTATCGATGTCTGTGAATGGGACAGCAAGAGGTAAGGAAAAGGCTCAAAAGCTTCTGATGTTGTTTAGAGAGCAACGGCAACGGGAATCACCACCAGCACCACCAACAGCACCGACACTAATACCAACACCGATACCGACGGACCAATCGGAGAGCGGCGGGACATCTATGGATGTGGCAGAATCAAAGCCACTGTGCAAGTCAATCTCAAGAAGAAAACCAGGAAAAGCTTTGAGCTTTTTGTGGAAAAGCAAAAGCTATTCAGTGTACCAATGCTGA 2337 43.99 MDISEVEENLFAASDAKLHRGMCKTLSALYCKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNTLQHCTESSKLYLAITGDSVLLKFEKVKSALQDSLKRVEDIVPQSIGYQVQEIMKELGSTQFFLDPLEKQVGDDIILLLQQGRTFNNAVDNNELEAFHQAATKLGINSSRAALAERRALKKLIDRSRTEDDKRKESIVAYLLHLMRKYSKLFRTEVSDDNDSQGSGPCSPTVQGSLDDSGAGGNGQAFERQLTKIGSFTLKPKIRKLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLNDGHNTCPKTQQKLSHLSLTPNFCVKGLIANWCEQYGVPVPDGPPDSLDLNYWRLALSEESLDLSPVDSVGSCKLKDVKVVPVDENSVTEEIKGNEVDDNSAEDEESNVNMLARHEQYLKVLNDEVDMKKKSAMVEQIRLLLKDDEEARISMGANGFVQGLLRYLEIAVQEQNTKAQESGAMALFNLAVNNDRNKEIMLAEGVISLLEDMIMNPNSHGYATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHANTETLCKLDALHTLYNLSTVPSNIPNLISSGIIKGLQALLAARLDRTWTEKCIAILINLASTESGRDQMSSTPELISGLAAILDNGEPIEQEQAVACLLILCNGNERCSEMVLQEGVIPGLVSMSVNGTARGKEKAQKLLMLFREQRQRESPPAPPTAPTLIPTPIPTDQSESGGTSMDVAESKPLCKSISRRKPGKALSFLWKSKSYSVYQC* 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17465490 17470830 - CsaV3_2G025400.1 Csa02g01820 519877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01820 778 PANTHER U BOX DOMAIN-CONTAINING 1 726 - -
Csa02g01820 778 Pfam U-box domain 280 348 IPR003613 GO:0004842|GO:0016567
Csa02g01820 778 Gene3D - 8 105 IPR036537 GO:0007166
Csa02g01820 778 MobiDBLite consensus disorder prediction 729 743 - -
Csa02g01820 778 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 351 IPR013083 -
Csa02g01820 778 SUPERFAMILY ARM repeat 429 699 IPR016024 -
Csa02g01820 778 MobiDBLite consensus disorder prediction 711 751 - -
Csa02g01820 778 MobiDBLite consensus disorder prediction 224 246 - -
Csa02g01820 778 CDD RING-Ubox_PUB 283 325 IPR045210 -
Csa02g01820 778 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 726 - -
Csa02g01820 778 SUPERFAMILY RING/U-box 279 355 - -
Csa02g01820 778 Gene3D - 399 716 IPR011989 -
Csa02g01820 778 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Csa02g01820 778 MobiDBLite consensus disorder prediction 222 249 - -
Csa02g01820 778 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01820 Csa-Chr2:17465490 Csa01g02400 Csa-Chr1:21307088 1.26E-60 dispersed
Csa04g00565 Csa-Chr4:3743008 Csa02g01820 Csa-Chr2:17465490 5.47E-82 transposed
Csa02g01820 Csa-Chr2:17465490 Csa05g02223 Csa-Chr5:25008453 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01820 - - csv:101220593 1500.34