Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01841 ATGGTGAGGAAATGCTCACACTGTGGGAATGTGGGTCACAATTCAAGAACTTGCACCATTCAAAAGCATAAAGAAACCAAGTTTAAGTTATTTGGAGTTCAACTCATTGATAATGGAACAACAACTCATCATCATCATCATCATACCACCTTGTTGAAGAAGAGTATTAGTTTGGATTCTTTGCCTTCTTCTTCTTCTTCGGCTTCTTCATCTTTATCGTCCTCTTCTTCTTCTGAGAAATTGTCAAATGGATATCTCTCAGACGGCCTCGTCGCCAAAACCCATGAAAGAAAAAAAGGTGTACCATGGAGTGAAGAGGAGCATAAGGTGTTTCTAATTGGGTTAGAAAAGCTTGGAAAAGGAGATTGGAGAGGAATTTCGAGGAAATTTGTGACGACAAGAACTCCGACTCAAGTAGCTAGTCATGCACAAAAATACTTTCTACGACTCACAACTCTCAACAAAAGAAAACAGCGTCGTCCCAGCCTTTTCGACGGTGCTGCAGCAAGGGACAAATTGACAGTGCAAGTGGTTGAAAAAGGCAGCAGCAGCAGCAGCAGCATCAACAACAATTTGAAACCAACCAATAATAATTATAATATCCAACCAGCTTCATCCAATAATATTTCCTTTGGGAATCCAACTCCAATTCCAAATATTTCAGAATTAACAAATCTCAATTGGATTGAGTATCATTATAATCAACGTCATCATGAGCCATATTTCAAGTTTCTTCAATCCCCCATCAACAAATCTTCAAGCTCAATTACGATCAACAATTTTCAAACAACAACCAATCATCATCATCATCGTCATCATCATCAACCTGATTTGCAGCTAAGTTTGTCCACTCCAAAGCCAGTACTTGAACAAGTAGCTCAGTGA 885 38.98 MVRKCSHCGNVGHNSRTCTIQKHKETKFKLFGVQLIDNGTTTHHHHHHTTLLKKSISLDSLPSSSSSASSSLSSSSSSEKLSNGYLSDGLVAKTHERKKGVPWSEEEHKVFLIGLEKLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRLTTLNKRKQRRPSLFDGAAARDKLTVQVVEKGSSSSSSINNNLKPTNNNYNIQPASSNNISFGNPTPIPNISELTNLNWIEYHYNQRHHEPYFKFLQSPINKSSSSITINNFQTTTNHHHHRHHHQPDLQLSLSTPKPVLEQVAQ* 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17600161 17602308 - CsaV3_2G025610.1 Csa02g01841 519898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01841 294 Pfam Myb-like DNA-binding domain 102 147 IPR001005 -
Csa02g01841 294 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 292 - -
Csa02g01841 294 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 149 IPR006447 GO:0003677
Csa02g01841 294 MobiDBLite consensus disorder prediction 264 294 - -
Csa02g01841 294 SUPERFAMILY Homeodomain-like 96 151 IPR009057 -
Csa02g01841 294 SMART sant 99 149 IPR001005 -
Csa02g01841 294 MobiDBLite consensus disorder prediction 278 294 - -
Csa02g01841 294 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Csa02g01841 294 CDD SANT 102 147 IPR001005 -
Csa02g01841 294 ProSiteProfiles Myb-like domain profile. 95 147 IPR001005 -
Csa02g01841 294 Gene3D - 101 154 - -
Csa02g01841 294 PANTHER TRANSCRIPTION FACTOR KUA1 1 292 - -
Csa02g01841 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 151 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01841 - - - csv:101204468 464.151
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01841 Csa-Chr2:17600161 Csa04g00428 Csa-Chr4:2690543 2.21E-47 dispersed
Csa02g01841 Csa-Chr2:17600161 Csa05g02385 Csa-Chr5:26033082 2.47E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g70 . . . . . . . . . Cmo12g00575 . . . Car12g00583 Sed08g1764 Cpe07g00556 . Bhi04g00508 Tan02g1642 Cmetu03g2033 . Hepe08g1387 . Lcy13g2180 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00635 . . . . . . . . . . . . . . . . . . Lsi08g01578 Csa02g01841 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001505 1 4 1 4 4 2 3 2 2 1 2 2 3 2 2 3 2 4 3 2 2 3 2 2 2 2 2 4 2 2 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30970 PF00249 Myb_DNA-binding 2.80E-10 CL0123 Csa TF