Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01843 ATGTCTACTGCCCTGCAACGAATCGATATGGGAGATGCTTGTCTGGGTCCCTCTGTGAATGATATTCGTGGAAATACAAAAGATTCAGCATTTCCAGACCCACAGTTCCAGCAATTAGAAACCTTTAGAACGTGCTTCTTACACAGTTACTCTAATGCTTCAAATTCTTCATTTGCAAGTTCTCTGATCTGTGAAGGTGATGAGTCTCTATGTAATGCAAATAATAAGTGGGAAAGCGATAGGTTTCATTGTATTCAGCAACTTTCTGGGGAGAATCCGGAAACATCTGATTCCCAGACCGTCTTGTCCATGGAACACCTGCACCAGAATGGCTGGATGTCATCTAACACTATGAACTCTAAGTTATGGAATGAGCTTTCTCTAAGCCTTGCTACAACCGAACCCGTCCTCAGTGGAGGAACTGATTTCCTGGACCAGTATTCTCAGTTGACTTTTTCTGGTGCTACTCAACCTTGCTTGAACAGCACAGAATTAGCCTCGAACTTAAATTCAGGCAGCTCTAGGGACCTCTCTCTAAGTTATGGATGTGGTAATTCTGTTCGCCTTTCTCGAGCAATAGCAGGATCTAGATATCTTTCGGTCATTCAAGATGTACTTTCTCAAATTGCAAGCTATCCACTGGAAAACTCAGATCAAGTTGATCATTCAACTACTGCAACTGGGTTTGTGCCGTTGTCATCATCAAGTTCCCTGGATGATGCAACGATTGAATATGGTTCTGATGTTACTGGTAGATACAGTTCTCAAATGGAGCCGGAATGGCAAAATCTATCTGTTGATGCCAAGAAGTCCCATCTGTTGACTCTACTACAATTGATTGATGAGAGGTACACTCAATGCTTGGATGAGATTCATACCGTTACTTCTGCGTTTCATGCTGCTACTGATTTGGACCCTCGCTTGCATACTCGATATACACTCCAGACGATCACTTCGGTGTATAAAAACTTGAGGGAGAAGATTACCAGTTGTATTTTTGCTATTGGGAAGCATTCTAACGCAACGTGCACCAAGGAGAAGGAAAAATTCTTTGAGGCAACATTCTTACAGAAGCAGTGGGCTCTCCAGCAGTTGAAAAGGAAAGATAATCAATTATGGAGGCCACAGAGAGGCTTGCCTGAAAAATCTGTCTCCGTTCTTAGGGCATGGATGTTTCAAAATTTTCTCCATCCGTACCCCAAGGACACAGAGAAGCATTTACTTGCAGTAAAAAGTGGATTAACTAGAAATCAGGTGTCTAATTGGTTCATCAATGCTCGTGTCCGATTGTGGAAACCGATGATCGAGGAAATGTATGCTGAAATGAGCAGAAGAAAATCCAATCAAAATGAGGAGGGAATCGAAAGAATTCATTGTCCCAGATAA 1386 42.21 MSTALQRIDMGDACLGPSVNDIRGNTKDSAFPDPQFQQLETFRTCFLHSYSNASNSSFASSLICEGDESLCNANNKWESDRFHCIQQLSGENPETSDSQTVLSMEHLHQNGWMSSNTMNSKLWNELSLSLATTEPVLSGGTDFLDQYSQLTFSGATQPCLNSTELASNLNSGSSRDLSLSYGCGNSVRLSRAIAGSRYLSVIQDVLSQIASYPLENSDQVDHSTTATGFVPLSSSSSLDDATIEYGSDVTGRYSSQMEPEWQNLSVDAKKSHLLTLLQLIDERYTQCLDEIHTVTSAFHAATDLDPRLHTRYTLQTITSVYKNLREKITSCIFAIGKHSNATCTKEKEKFFEATFLQKQWALQQLKRKDNQLWRPQRGLPEKSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVRLWKPMIEEMYAEMSRRKSNQNEEGIERIHCPR* 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17613594 17615301 + CsaV3_2G025630.1 Csa02g01843 519900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01843 461 CDD homeodomain 373 434 IPR001356 GO:0003677
Csa02g01843 461 Pfam Associated with HOX 193 329 IPR006563 -
Csa02g01843 461 SUPERFAMILY Homeodomain-like 374 442 IPR009057 -
Csa02g01843 461 Pfam Homeobox KN domain 390 429 IPR008422 GO:0003677|GO:0006355
Csa02g01843 461 ProSiteProfiles 'Homeobox' domain profile. 370 433 IPR001356 GO:0003677
Csa02g01843 461 SMART HOX_1 373 437 IPR001356 GO:0003677
Csa02g01843 461 PANTHER HOMEOBOX PROTEIN ATH1 18 456 - -
Csa02g01843 461 SMART prehox3 187 330 IPR006563 -
Csa02g01843 461 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 18 456 - -
Csa02g01843 461 Gene3D - 376 455 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01843 - - - csv:101204223 915.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01843 Csa-Chr2:17613594 Csa06g02470 Csa-Chr6:21978294 2.79E-43 dispersed
Csa02g01843 Csa-Chr2:17613594 Csa03g03494 Csa-Chr3:31283814 1.07E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g68 . . . . Bpe02g01536 . . . Cmo05g00107 Cmo12g00574 . Cma05g00100 . Car12g00582 . Cpe07g00555 . Bhi04g00500 . . . Hepe08g1385 . Lcy13g2179 . . . . . . . . . Cone17ag0921 Cone20ag0264 . . . . Blo17g00292 . Bda01g01326 Bda13g01607 Bpe14g00258 . Bma01g00927 . . . . . Cma12g00634 . Car05g00086 Cpe11g00080 . . . . . . . . . . . . . . . Lsi08g01577 Csa02g01843 Chy03g01640 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003901 2 8 1 1 2 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30971 PF07526 POX 4.40E-22 No_clan Csa TF