Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01848 ATGGCTTGCTTACACGATCACAGCTGCGAAGATCACGATTGTTCTTCTGATTGGTCTCTTTACAAGCACATAGACCTCCCCAGAGTTTCAGCTTTGAATGAGGCAACTCCAGGAAGTGTGAAGTCAGTATTTAAAGCTTGGGAGCATCGGTTAAACTCATCTGGGGATCACTTGGAAAGCAACGAGGGTGATCCTGAACTGCTAGTTTTCATCCCATTTACATCAGATGTTAAGATCAAAAGCATATCTATCATTGGTGGTCCAGATGGTACTAGTCCTTCAAAGATGAGGGTGTTTATCAATCGAGAAGGTATTGACTTCTCAGATGCTCAAAGTATGCAAGCTGTTCAGGAGTGGGATTTGGCTGAGAATTTGCAAGGAGTATTAGAGTACCAAACAAGATATTCCAAATTTCAAGGTGTGGGAAACATCACTTTGCATTTTCCTGATAATTATGGTGGTGACACGACTCAGATACACTACATTGGGTTGAAAGGTGAAGCCACGCAGCTAAAGAGAGATGTTGTTGCAACAATTGTCTACGAAATCACACCAAATCCTTCTGACCACAAGACTCGAGCGGAAGGTGGTGCCGGATTTTCAAATGTCGAATGA 615 42.76 MACLHDHSCEDHDCSSDWSLYKHIDLPRVSALNEATPGSVKSVFKAWEHRLNSSGDHLESNEGDPELLVFIPFTSDVKIKSISIIGGPDGTSPSKMRVFINREGIDFSDAQSMQAVQEWDLAENLQGVLEYQTRYSKFQGVGNITLHFPDNYGGDTTQIHYIGLKGEATQLKRDVVATIVYEITPNPSDHKTRAEGGAGFSNVE* 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17637715 17642035 - CsaV3_2G025680.1 Csa02g01848 519905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01848 204 PANTHER AD039 HT014 THIOREDOXIN FAMILY TRP26 5 195 IPR045099 -
Csa02g01848 204 PANTHER PITH DOMAIN-CONTAINING PROTEIN 1 5 195 - -
Csa02g01848 204 SUPERFAMILY Galactose-binding domain-like 6 167 IPR008979 -
Csa02g01848 204 Pfam PITH domain 20 167 IPR010400 -
Csa02g01848 204 Gene3D PITH domain 11 177 IPR037047 -
Csa02g01848 204 ProSiteProfiles PITH domain profile. 9 184 IPR010400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01848 - - - csv:101216321 413.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00324 Csa-Chr2:2211190 Csa02g01848 Csa-Chr2:17637715 2.58E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g57 . . . . . . . . . . . Cma05g00104 . . Sed08g1758 . . Bhi04g00493 Tan02g1651 Cmetu03g0683 . Hepe08g1380 . Lcy13g2175 . . . . . . . . . . . . . . . Blo17g00294 . . Bda13g01609 Bpe14g00256 . . . . . . . . . Car05g00090 Cpe11g00084 . . . . . . . . . . . . . . . Lsi08g01573 Csa02g01848 Chy03g01636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011268 1 2 1 0 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 29