Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01860 ATGATCGCTGAATCAATGCTCCTCAATCCCACCTCTCACATTTCAACCTGGGACTCCCTCGACGATCCCTCCCCCGCAATCTCTTCCTATTTCTCCACCGCCCACGTCTCCCCCCTCGATTCACCTACGGCCGCGCTCATGGACTTCGATTCCTCCTTATGGGAAGATCCTGACTTGCCAGCGCCTGTGGACGCCTACTCCTGCGACCAGTTCCGGATGTATGAGTTCAAAGTCCGCTCCTGCGCACGTGGCAGGTCGCACGATTGGACCAAATGTCCGTACGCTCACACCGGCGAGAAGGCTCGCCGTCGAGATCCGAGGAAGTTTAACTATTCCGGCGCCGAGTGCCCGGATTTACGCCATGGGTGTTGTAAAAAGGGAGACGCCTGCGAGTACGCTCATGGAACTTTTGAGATTTGGCTCCACCCAGACCGATACCGGACTCAACCGTGCCGTGATGGAACTGGCTGTCGCCGGCGGGTCTGTTTCTTCGCTCACACGTCGGAGCAACTCCGGATTCCGGGGAAACAAAGTGTCAGGTCTCCACGAGCGAGAGAAATGGCTATCCCTGCTGTGTCGTCACCGACATCGATCCTCTTATCGCCGTCTTCGGACTCGCCACCTTTGTCTCCAATCAGCCCTGTAATCAGCGGCGGCGAATCATTCAGCAGATTAGTCGCATTGATGCACAGTCTCCGCCTAGATGAATTAAAAACGAATCCTGGCGTCTCCAGCTTCAGTCCAAATCTCCGTCGGAGCTCCGGTGCAGCATTTGATCTATGGGATAGAGAAAATGAAGAAGAACCAGCAATGGAAAGAGTGGAATCAGGAAGAAATCTACGAGCCCAAATGTATGCCAAATTAATGAGAGAGAATTCAGTGGACCGTGTCCGGCCAATGATATCGGCCGGATCTCTGAACTAA 924 54.11 MIAESMLLNPTSHISTWDSLDDPSPAISSYFSTAHVSPLDSPTAALMDFDSSLWEDPDLPAPVDAYSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLRHGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVRSPRAREMAIPAVSSPTSILLSPSSDSPPLSPISPVISGGESFSRLVALMHSLRLDELKTNPGVSSFSPNLRRSSGAAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPMISAGSLN* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17700459 17702458 - CsaV3_2G025800.1 Csa02g01860 519917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01860 307 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 249 303 - -
Csa02g01860 307 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 243 - -
Csa02g01860 307 PANTHER UNKEMPT FAMILY MEMBER 7 243 IPR045234 -
Csa02g01860 307 PANTHER UNKEMPT FAMILY MEMBER 249 303 IPR045234 -
Csa02g01860 307 SMART c3hfinal6 110 136 IPR000571 GO:0046872
Csa02g01860 307 SMART c3hfinal6 145 168 IPR000571 GO:0046872
Csa02g01860 307 Gene3D - 107 178 - -
Csa02g01860 307 ProSiteProfiles Zinc finger C3H1-type profile. 110 137 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02890 Csa-Chr1:25366330 Csa02g01860 Csa-Chr2:17700459 5.40E-79 dispersed
Csa02g01860 Csa-Chr2:17700459 Csa03g03622 Csa-Chr3:32257914 4.97E-55 dispersed
Csa02g01860 Csa-Chr2:17700459 Csa04g02516 Csa-Chr4:24989859 4.10E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30973 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01860 - - csv:101214248 598.201