Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01861 ATGGAAGATGATGAGTACAAGGTTCATGGTGATAGGTGTAGGGGAAATTTCTTGTACAATTCAGTACCTGTTTTAGCCACTAATTCTTCATCTCCTGTGGGCAATTTCGTAATTAGATCATCATATTCATCGGCCTCTTCTTCAAATGGGAATAATCATAATCATCATCACCATCATCATCACATGATCATGGCCGCCGGTCACTCCAATAATTATTTTCCACCCTCCGATCAACTACAACTTCCTGTCAAAGTGGAGCCTCCCACTACCACTACTACTGCTTCTTCTTCACAATCTCATCATATTCAACTTCATGATTTTCATTACCATTTAATGACTGAGTTCCAAAATAATCATATTAATATTAATATTAATAATCATAATTCTGATTCAATCAAAGCCAAAATTCTTTCTCACTCTCTTTTCTCTAACATCCTCCAAGCTTTCTTGGATTGCCAAAATGTCGGAGCTCCGCCGGAGGTGGCTGCAAAACTTACTTCGGTACGGGAGGAATTCGAGCGACAGCGGTCTTCAATGGCGACCGCTGAGGGTTCATCAATTGACCCTGAACTTGATCAATTCATGTATAGAGAGGAGTTAAGAAGGCCAATTCAAGAAGCTGTAGATTTTATGCACAGAATTGAATCTCAGCTTAATACTCTCTGCAATGGCTCCTTTCAAATCTTACCATCTGGAAGAGAAGGAAAGAGTGAAGGAATGGGATCATCAACGGAGGAGGAAGCTGAGAAAGGCGGAGAAGAGGAAAGAGAGATAGAAGAAGATCAAATCGACCCACGAGCAGAAGAAAGAGAGCTTAAGAATCACTTACTAAAAAAATACAGTGGTTATCTTAGCAGTTTAAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGAAAACTCCCTAAAGACGCAAGACAACAACTCCTCCGTTGGTGGGAACTGCATAACAAATGGCCATACCCATCGGAGGCAGAAAAATTGGCGCTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTTATAAACCAAAGGAAAAGGCACTGGAAGCCTTCTGAGGATGTGCAGTTTATGGGTATGGAGGGGTTTTACCATCCCAATGCTGCTGCTTTTTACTTTGATCATGGCCATTTCATGGCTGATTCTCATTATCGTTTGGGTCCATGA 1176 40.99 MEDDEYKVHGDRCRGNFLYNSVPVLATNSSSPVGNFVIRSSYSSASSSNGNNHNHHHHHHHMIMAAGHSNNYFPPSDQLQLPVKVEPPTTTTTASSSQSHHIQLHDFHYHLMTEFQNNHINININNHNSDSIKAKILSHSLFSNILQAFLDCQNVGAPPEVAAKLTSVREEFERQRSSMATAEGSSIDPELDQFMYREELRRPIQEAVDFMHRIESQLNTLCNGSFQILPSGREGKSEGMGSSTEEEAEKGGEEEREIEEDQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQQLLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAFYFDHGHFMADSHYRLGP* 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17710802 17714865 + CsaV3_2G025810.1 Csa02g01861 519918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01861 391 ProSitePatterns 'Homeobox' domain signature. 329 352 IPR017970 GO:0000981|GO:0006355
Csa02g01861 391 SMART KNOX1_2 130 174 IPR005540 GO:0003677|GO:0005634
Csa02g01861 391 CDD homeodomain 303 355 IPR001356 GO:0003677
Csa02g01861 391 SMART KNOX2_2 181 223 IPR005541 GO:0003677|GO:0005634
Csa02g01861 391 SMART HOX_1 293 358 IPR001356 GO:0003677
Csa02g01861 391 SMART ELK_2 271 292 IPR005539 GO:0003677
Csa02g01861 391 Pfam KNOX2 domain 188 222 IPR005541 GO:0003677|GO:0005634
Csa02g01861 391 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 382 - -
Csa02g01861 391 ProSiteProfiles ELK domain profile. 271 291 IPR005539 GO:0003677
Csa02g01861 391 SUPERFAMILY Homeodomain-like 292 364 IPR009057 -
Csa02g01861 391 Gene3D - 288 360 - -
Csa02g01861 391 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 6 382 - -
Csa02g01861 391 Pfam ELK domain 271 292 IPR005539 GO:0003677
Csa02g01861 391 Pfam KNOX1 domain 132 173 IPR005540 GO:0003677|GO:0005634
Csa02g01861 391 MobiDBLite consensus disorder prediction 229 268 - -
Csa02g01861 391 ProSiteProfiles 'Homeobox' domain profile. 291 354 IPR001356 GO:0003677
Csa02g01861 391 Pfam Homeobox KN domain 311 350 IPR008422 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01861 Csa04g02513 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01861 Csa-Chr2:17710802 Csa05g02319 Csa-Chr5:25644124 1.01E-71 dispersed
Csa02g01861 Csa-Chr2:17710802 Csa04g02513 Csa-Chr4:24958037 3.63E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30974 PF03790 KNOX1 5.50E-16 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01861 - - csv:101219997 676.781