Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01862 ATGCCGGAGCCTTGCCAATCATCGCCTTTCAGTGATGACGAGAGCTGTGATTTTGACTGGGATAGTCTTGGATTTGGGCTAATGCCAACAGATTATATGTATATTATGAAATGCTCTAAAGATGGGAATTTTGAACGAGGTCAAATGAGCCGTTTCGGGAACATTGAGTTAAGCCCTTCTGCTGGGGTTCTAAATTATGGACAGGGCTTGTTTGAAGGCCTAAAAGCTTATAGGAAAAAAGATGGGGGCTTTCGTCTATTTCGTCCAGACCAAAACGCTCTTCGTATGATGACCGGTGCTGAACGAATGTGTATGCCATCACCCTCCATTGAACAGTTTATCGATGCTGTGAAGCAAATTACCATTGCTAATAGGCGTTGGGTCCCTCCGCTGGGGAAAGGATCACTTTACATAAGGCCTTTGCTCATTGGAACTGGTCCAGTTCTTGGCTTGGCTCCTGCGCCCGAGTATACTTTTCTAATTTATGCTTCCCCTGTTTGCAATTATTTTAAGGAAGGTTCGGCACCCTTGAACCTATATGTTGAGAATGAATTCGTTCGTGCATCTCGTGGTGGAACTGGAGGTGTGAAAACCATTTCAAATTATGCTCCGGTCTTAAAAGCTATCACCCAAGCAAAAAACCGAGGGTTTTCTGACGTGTTATACCTTGATTCAGTGAATAAGAGAGATCTGGAAGAAGTTTCTTCTTGCAATATTTTCCTTGTAAAGGGCAATGTTATTTCAACTCCTGCTACAAATGGAACAATTCTTCCAGGAGTAACCCGAAAAAGCATCATTGAAATTGCCCGCGATCGAGGTTATGAGGTTGAGGAACGAGCCGTTAACATGGAAGAACTGTTCGACGCTAGTGAAGTTTTCTGCACCGGAACTGCTGTTGGTGTGGCCCCAGTTGGCAGCATCACATGTATGGATAGAAGGATTGAATACCGAACAGGTGCTAACACAACATGCCAAGAACTATATTCAACTCTGGTTGGGATTCAAACTGGAACCATTGAGGATAAGATGGGGTGGACTGTTGAGATCTCTTGA 1053 43.97 MPEPCQSSPFSDDESCDFDWDSLGFGLMPTDYMYIMKCSKDGNFERGQMSRFGNIELSPSAGVLNYGQGLFEGLKAYRKKDGGFRLFRPDQNALRMMTGAERMCMPSPSIEQFIDAVKQITIANRRWVPPLGKGSLYIRPLLIGTGPVLGLAPAPEYTFLIYASPVCNYFKEGSAPLNLYVENEFVRASRGGTGGVKTISNYAPVLKAITQAKNRGFSDVLYLDSVNKRDLEEVSSCNIFLVKGNVISTPATNGTILPGVTRKSIIEIARDRGYEVEERAVNMEELFDASEVFCTGTAVGVAPVGSITCMDRRIEYRTGANTTCQELYSTLVGIQTGTIEDKMGWTVEIS* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17720548 17724577 + CsaV3_2G025820.1 Csa02g01862 519919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01862 350 PANTHER AMINO ACID AMINOTRANSFERASE 10 349 IPR005786 GO:0004084|GO:0009081
Csa02g01862 350 ProSitePatterns Aminotransferases class-IV signature. 233 262 IPR018300 GO:0003824
Csa02g01862 350 Gene3D - 5 177 IPR043131 -
Csa02g01862 350 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 11 346 IPR036038 GO:0003824
Csa02g01862 350 PIRSF BCAT1 3 350 IPR005786 GO:0004084|GO:0009081
Csa02g01862 350 CDD BCAT_beta_family 56 337 IPR033939 GO:0004084|GO:0009081
Csa02g01862 350 TIGRFAM ilvE_II: branched-chain amino acid aminotransferase 46 349 IPR005786 GO:0004084|GO:0009081
Csa02g01862 350 Gene3D - 178 349 IPR043132 -
Csa02g01862 350 Pfam Amino-transferase class IV 69 307 IPR001544 GO:0003824
Csa02g01862 350 PANTHER BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE 10 349 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01862 K00826 E2.6.1.42, ilvE; branched-chain amino acid aminotransferase [EC:2.6.1.42] - csv:101214004 712.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01862 Csa-Chr2:17720548 Csa06g03056 Csa-Chr6:26270088 1.86E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g593 . . . . . . . . Cmo05g00119 . . . . Car12g00561 . . . Bhi04g00472 . . . . . . . . . . . . . Cone6ag1482 . Cone8ag0180 Cone12ag0187 . . . . . . . . . . . . . . . . Cma05g00115 . . Cpe11g00101 . . . . . . . . . . . . . . . . Csa02g01862 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007941 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 36