Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01865 ATGATGGCATCCTTGTCTTCTAAAGCTAGCCATGATTCTCATGGACAAAATTCTTCCTACTTCTTTGGATTGCAAGAGTATGAGAAGGACCCTTATCACCCTATTCAAAACCCCTCGGGAATTATACAAATGGGTCTTGCCGAAAACAAGGTATGTCCTGACCTTTTGGATGAGTGGATGGAGAACAATCCAGATGCTTTGGGATTGAGAAGAAATGGAGTGTCTGAGTTTAGAGAATTAGCTCTATTTCAAGACTATCATGGCTTGCCAGCTTTTAAAAAGGTGTTGGTTGAATCAATGGAAGAGATACGAGGAAACAAAATGAAATTTGAAAAGAACAAACTGGTGCTCACTGCTGGTGCAACTGCTGCCAATGAAATCATAATATCCTGTCTTGCCGATCCCGGTGAAGCCTTCCTTGTTCCCACTCCTTACTATCCAGGGTTTGACAGGGACTTAAAATGGCGAACTGGAGTGCAAATAATTCCAATTCATTGTTCGAGTTCAAACGGTTTTCGAATCACCGAAGTGTCGATGGAGGAAGCCATGGAGCAAGCCCAATCATTGAATTTACGAGTCAAAGGGATTATGATTACGAACCCATCTAACCCATTGGGCACCACATTGAGCCAGAAAGAGCTCAACTCAGTGGTGGATTTTGCTACAACCAACGCAATCCACATCGTGAGCGACGAGATATATTCTGCCACAGTTTTTGAGCAACCGAATTTCCGAACTGTCATGGACCCGAACCTACAAAAACTCCCAATTTGGGATCGAATCCACTTGGTGTACAGCTTGTCCAAAGATTTAGGCCTACCTGGGTTTCGTGTGGGCATGATTTATTCAAACGACCCAGCGGTAGTGGATGCGGCTACTAAAATGTCGAGCTTTTGCTTAGTTTCTTCTCAAACACAGTATTTTGTGTCACAAATTGTAGGGGATGAAAATTTTCGAGGGAATTATATGCAGGAAATGAAGCGGAGGATCCGGAAGAGGAGATTGATGTTGGAGTCGAGTCTTCGACAGGGCGGTGTTAGATGTCTGAAAGGAAATGCGGGGTTGTTTTGTTGGGTGGATATGAGGCATCTTTTGAAGTACCCGAGTTTCGAAGAGGAAATGGAGATTTGGAAGACGATTTTGTATGAGGTTGGGATTAATATCTCCCCCGGCTCATCTTTTCATTGCTCTGAACCTGGTTGGTTCAGAATGTGCTTTGCTAATATGGAGGAGCACACTTTCAAGGAGGCCATGCATCGTCTTAAGGCCTTTCTCAACTCTACCTCATCTCTCAACGGCCATGAACTCTCCCCCACTAACGTATAA 1326 43.97 MMASLSSKASHDSHGQNSSYFFGLQEYEKDPYHPIQNPSGIIQMGLAENKVCPDLLDEWMENNPDALGLRRNGVSEFRELALFQDYHGLPAFKKVLVESMEEIRGNKMKFEKNKLVLTAGATAANEIIISCLADPGEAFLVPTPYYPGFDRDLKWRTGVQIIPIHCSSSNGFRITEVSMEEAMEQAQSLNLRVKGIMITNPSNPLGTTLSQKELNSVVDFATTNAIHIVSDEIYSATVFEQPNFRTVMDPNLQKLPIWDRIHLVYSLSKDLGLPGFRVGMIYSNDPAVVDAATKMSSFCLVSSQTQYFVSQIVGDENFRGNYMQEMKRRIRKRRLMLESSLRQGGVRCLKGNAGLFCWVDMRHLLKYPSFEEEMEIWKTILYEVGINISPGSSFHCSEPGWFRMCFANMEEHTFKEAMHRLKAFLNSTSSLNGHELSPTNV* 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17751705 17753946 + CsaV3_2G025850.1 Csa02g01865 519922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01865 441 Gene3D Aspartate Aminotransferase, domain 1 30 420 IPR015422 GO:0003824
Csa02g01865 441 CDD AAT_like 78 423 - -
Csa02g01865 441 SUPERFAMILY PLP-dependent transferases 11 426 IPR015424 -
Csa02g01865 441 Gene3D - 64 315 IPR015421 GO:0003824
Csa02g01865 441 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 266 279 IPR004838 GO:0003824|GO:0009058|GO:0030170
Csa02g01865 441 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 2 431 - -
Csa02g01865 441 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 44 70 - -
Csa02g01865 441 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 77 93 - -
Csa02g01865 441 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 114 134 - -
Csa02g01865 441 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 136 157 - -
Csa02g01865 441 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 190 214 - -
Csa02g01865 441 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 226 249 - -
Csa02g01865 441 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 260 284 - -
Csa02g01865 441 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 292 315 - -
Csa02g01865 441 Pfam Aminotransferase class I and II 42 421 IPR004839 GO:0009058|GO:0030170
Csa02g01865 441 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9 2 431 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01865 K01762 ACS; 1-aminocyclopropane-1-carboxylate synthase [EC:4.4.1.14] - csv:101213522 889.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01865 Csa-Chr2:17751705 Csa04g00609 Csa-Chr4:4014277 1.54E-166 dispersed
Csa02g02546 Csa-Chr2:22327038 Csa02g01865 Csa-Chr2:17751705 5.67E-08 transposed
Csa03g00673 Csa-Chr3:5926748 Csa02g01865 Csa-Chr2:17751705 1.38E-06 transposed
Csa04g01815 Csa-Chr4:17798922 Csa02g01865 Csa-Chr2:17751705 2.11E-15 transposed
Csa02g01865 Csa-Chr2:17751705 Csa06g03054 Csa-Chr6:26242337 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g599 Blo01g01481 . . . Bpe02g00470 . . Bma01g02225 Cmo05g00121 . . . . . Sed11g0907 . . Bhi04g00467 Tan02g1683 Cmetu03g1555 . Hepe08g1362 . Lcy13g2159 Cla08g01646 Cam08g2149 Cec08g1738 Cco08g1856 Clacu08g1837 . Cre08g1621 Cone4ag1638 . Cone17ag0907 Cone20ag0251 . . . Cme03g02130 . . . . . . . . . . . . Cma05g00118 Car05g00101 . Cpe11g00103 . . . . . . . . . . . . . . . Lsi08g01554 Csa02g01865 Chy03g01621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000568 4 3 5 5 5 3 5 3 3 2 3 3 5 2 3 5 3 6 5 3 3 4 2 3 2 3 3 4 3 1 104