Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01869 ATGGCTGGTTCTACTTCTGGCTTTCAATGTGAAACAATGAAGTGTTCTTTTGGAGTTAGCAGTTCTCAGCCATTGATTGGAGTTGATACTTCTTTTTCATCTACTCTTGGATCTTCTTCAACAACTCCTCTATGTGAATTATCCACAGCTTCTTTGGAGAATGAGGGAGTGAAAACCATTTCTAACATTCTTCATGATCCTTCAACTTTGAGTTTTGATATGTTTGGAACTGGGAACTTCTCAGATATGGTGGGTTCTTTTGGCTTTCTAACTGAAGCTGATCATAGCCAGATCGCCAATATTAAGTGTCCATTTAGTTATGTGCAAATTCTGGATGACGAAGAAATGGTCTCACCAAAGAACGATGCAAAGTCTCGACCCGATTGCGTTAGTGAAAATCAAAGAAAATTTGTTCTTGGTTCCAATTCTTCTAGCCCAAATAAGAATGCTGAAGATAACTTTAATGTGGAACCAACTGAGATCCTTGATAAAGCTGACAAAACACAGAAGGTTGAGCATCGATTGAGTGCAAATTTTAACACCAAACCAGATAGTAAAAAAGCCAAAGGAGGCTCTCAAAATGTACAAGCCCCCAAGGAGAATTATATTCATGTTCAAGCGCGAAGGGGGCGAGCTGCTAATAACCATAGCCTCGCAGAAAGGGTTAGAAGGGAAAAAATCAGCGAACGAATGAAGTTGCTGCAACAGCTTGTTCCTGGATGCCATCAGATTACCGGGAAAACCGTGGTGCTCGACGAAATTATTAACTATGTACAATCACTGCAACAACAGGTGGAGTTTCTATCAATGAAACTCGCAAGTGTCGGACTAGAATCAAGCTTGGAGGCAGAGCAGATTCTACTCACAAATAATTCATACCTTTCGTCATCGAATGTTCTTTGTAAGAGAGGCGAAAACGTCAACGATCCTAGATCAAGGATAATTCACACAAGTCCTCATGTCACGTTTCAACTTTATGGAACAACGCCAACCATGCCAAGAACTACATCTCCTTCAACTTTCTAA 1026 40.45 MAGSTSGFQCETMKCSFGVSSSQPLIGVDTSFSSTLGSSSTTPLCELSTASLENEGVKTISNILHDPSTLSFDMFGTGNFSDMVGSFGFLTEADHSQIANIKCPFSYVQILDDEEMVSPKNDAKSRPDCVSENQRKFVLGSNSSSPNKNAEDNFNVEPTEILDKADKTQKVEHRLSANFNTKPDSKKAKGGSQNVQAPKENYIHVQARRGRAANNHSLAERVRREKISERMKLLQQLVPGCHQITGKTVVLDEIINYVQSLQQQVEFLSMKLASVGLESSLEAEQILLTNNSYLSSSNVLCKRGENVNDPRSRIIHTSPHVTFQLYGTTPTMPRTTSPSTF* 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17778099 17780726 - CsaV3_2G025890.1 Csa02g01869 519926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01869 341 Gene3D - 208 286 IPR036638 GO:0046983
Csa02g01869 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 211 261 IPR011598 GO:0046983
Csa02g01869 341 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 290 IPR024097 GO:0006355
Csa02g01869 341 MobiDBLite consensus disorder prediction 181 198 - -
Csa02g01869 341 Pfam Helix-loop-helix DNA-binding domain 214 262 IPR011598 GO:0046983
Csa02g01869 341 SMART finulus 217 267 IPR011598 GO:0046983
Csa02g01869 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 275 IPR036638 GO:0046983
Csa02g01869 341 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 290 - -
Csa02g01869 341 MobiDBLite consensus disorder prediction 177 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01869 - - - csv:101203010 636.721
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01869 Csa04g02505 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01869 Csa-Chr2:17778099 Csa05g01353 Csa-Chr5:14293739 6.06E-42 dispersed
Csa02g01869 Csa-Chr2:17778099 Csa04g02505 Csa-Chr4:24884098 3.25E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g606 Blo01g01485 . . . Bpe02g00466 . . Bma01g02229 . . . Cma09g00309 Car01g01375 . . Cpe06g00219 . Bhi04g00460 . . . . . . Cla08g01642 Cam08g2146 Cec08g1734 Cco08g1853 Clacu08g1834 . Cre08g1617 Cone4ag1634 . Cone17ag0902 Cone20ag0245 Lsi04g01455 Csa04g02505 . Cme03g02126 . . . . . . . . Sed11g1869 Cmo01g01823 . . . . Car09g00262 . Cpe02g00239 Bhi09g03191 Tan01g4661 Cmetu07g1171 . Hepe01g1851 Mch11g0386 . . . . . . . . Lsi08g01550 Csa02g01869 Chy07g00212 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014327 0 4 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 0 2 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30976 PF00010 HLH 7.40E-06 No_clan Csa TF