Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01870 ATGAAGTCCATGAGTGATAATGAGGATAGTAACAACAATAATAACAATAACAATAATAGTTGGTTAGGATTCTCTCTTTCTCCCCACATGAAAATGGAGGTTTCTTCTTCTGATCATCCATATAATCAACACCATTCTCTTCACTCTGCTTCAAATCCTTTCTACTTATCTCCTCATTTCAACAACAATAACACTGAAATCTTTTATGGGATTCCTGATAATTCCTCTCTTCATCATCACTCTGCTGCTGCTTCCCTCTCGGTAATGCCTCTCAAATCCGATGGTTCACTCTGTATTATGGAAGCCCTTTCAAGATCTCAAACTGAAGGGATGGTGCCGAGTTCTTCACCGAAACTTGAGGATTTTCTTGGTGGTGCAACAATGGGAGGTCGAGGAGGCTATTTTAATCAAAATGCTGAATCTGAATCCGACAGGGAACATTCTTTCGACCTTCTTCAAAGACCCATTAGACAAAATCAACAAATTTTAATTCAAAATTCCAATCAATATTATTCTGGGTTACTTCCTTCTTCCATTGGAATTGGAACTTGTGATCCCCAAATTCTTCCTCCTGATGACGACGGAATCCCTTGCTTTAGAAACTGGGTCTCTCGCTCTCACTACTCCGCCACTCATAATACTCTCGAGCACCACATTACCGGCGGCGATGGCGGCGGCGGCGGCACTCTTATGAATGAAAGTAATGGTGGTGGTTCTGCTTCCATTGGCGGAATGAGCTGTGGAGAATTACAGTCGTTGAGTTTGTCGATGAGTCCAGGTTCTCAATCGAGCTCGTTCACGACTTCCGGCCAGATCTCCCCTACTGGAGGCGACGGCACCGCCGTGGAAACTAAAAAAAGAGGCCCCGGAAAACTCTGCCAGAAACAACCCGTTCATCGTAAATCCATCGATACTTTTGGCCAAAGAACCTCTCAATATCGTGGCGTCACCAGGCATAGATGGACGGGGAGATATGAAGCTCATCTGTGGGATAACAGTTGCAAGAAAGAAGGACAAACCAGAAAAGGAAGACAAGTGTATCTTGGAGGATATGATATGGAAGAAAAAGCTGCGAGAGCTTACGATCTTGCCGCCCTCAAGTATTGGGGACCCTCTACTCATATAAACTTTCCGTTGGAAAATTATCAGACTGAACTAGAAGAAATGAAGAATATGAGCCGCCAAGAATATGTTGCCCACTTGAGAAGGAAAAGCAGTGGCTTTTCAAGGGGCGCTTCAGTTTTCCGTGGTGTCACAAGACATCACCAACATGGACGATGGCAAGCTAGAATTGGGAGAGTTGCTGGAAACAAAGATCTTTATCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTATGACATAGCAGCAATCAAATTCCGCGGTGTAAATGCAGTCACCAACTTTGACATTTCCAGATATGATGTCGAGAAAATCATGGCTAGTAATACTCTACTGGCAGGCGAGCTGGCTAGAAGGAACAAGGATGTCGAACCAAGCAACGATTCCTCAATCGTTCCCTACGACTCCTCCATTGTGTCAAACAACAATGGTGGGATTGGGATTGGGATGGAAATAAATCCCGACGCCAACACCGCAAATGGGAACGCTAATGATTGGAAAATGGCATTGTATCAAAATCCATCACACCACCAGCAACAGGCAGCTGCCGCTACTTGTGTTGCTGACTCTTTGGATAATCATCAAAACAAGTCGATGGCTGTGTCGGGCGGTTATCGAAACACGTCGTTTTCGATGGCATTGCAGGATTTGATTGGGATCGAATCGTTAAGCGCTAATACTCATGGGATTGAAGATGATGTGAGCAAACAGGTGACACATTTTTCAAATTCATCATCGTTGGTGACGAGTTTAAGTAGCTCGAGAGAAGGTAGTCCTGACAAAACGAATGTGTCAATGCCGTTTGGAAAGGCCCCACCCTTAATGGCATCAAAGCTAATCGGTGCAACAAACGGTGTTGGAGTCGGGTCTTGGTATCCATCCCCACAGCAGCTGAGGCCAACAGCAGCAGCAGCCATTTCCATGGCACATTTGCCTGTTTTTGCAACATGGAATGACACTTAA 2091 44.95 MKSMSDNEDSNNNNNNNNNSWLGFSLSPHMKMEVSSSDHPYNQHHSLHSASNPFYLSPHFNNNNTEIFYGIPDNSSLHHHSAAASLSVMPLKSDGSLCIMEALSRSQTEGMVPSSSPKLEDFLGGATMGGRGGYFNQNAESESDREHSFDLLQRPIRQNQQILIQNSNQYYSGLLPSSIGIGTCDPQILPPDDDGIPCFRNWVSRSHYSATHNTLEHHITGGDGGGGGTLMNESNGGGSASIGGMSCGELQSLSLSMSPGSQSSSFTTSGQISPTGGDGTAVETKKRGPGKLCQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVEKIMASNTLLAGELARRNKDVEPSNDSSIVPYDSSIVSNNNGGIGIGMEINPDANTANGNANDWKMALYQNPSHHQQQAAAATCVADSLDNHQNKSMAVSGGYRNTSFSMALQDLIGIESLSANTHGIEDDVSKQVTHFSNSSSLVTSLSSSREGSPDKTNVSMPFGKAPPLMASKLIGATNGVGVGSWYPSPQQLRPTAAAAISMAHLPVFATWNDT* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17788116 17791862 - CsaV3_2G025900.1 Csa02g01870 519927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01870 696 ProSiteProfiles AP2/ERF domain profile. 312 378 IPR001471 GO:0003700|GO:0006355
Csa02g01870 696 CDD AP2 413 474 IPR001471 GO:0003700|GO:0006355
Csa02g01870 696 Pfam AP2 domain 413 464 IPR001471 GO:0003700|GO:0006355
Csa02g01870 696 Pfam AP2 domain 312 370 IPR001471 GO:0003700|GO:0006355
Csa02g01870 696 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 17 649 - -
Csa02g01870 696 CDD AP2 311 378 IPR001471 GO:0003700|GO:0006355
Csa02g01870 696 SUPERFAMILY DNA-binding domain 413 474 IPR016177 GO:0003677
Csa02g01870 696 MobiDBLite consensus disorder prediction 253 278 - -
Csa02g01870 696 Gene3D AP2/ERF domain 414 474 IPR036955 GO:0003700|GO:0006355
Csa02g01870 696 Gene3D AP2/ERF domain 311 380 IPR036955 GO:0003700|GO:0006355
Csa02g01870 696 PRINTS Ethylene responsive element binding protein signature 313 324 IPR001471 GO:0003700|GO:0006355
Csa02g01870 696 PRINTS Ethylene responsive element binding protein signature 454 474 IPR001471 GO:0003700|GO:0006355
Csa02g01870 696 MobiDBLite consensus disorder prediction 253 300 - -
Csa02g01870 696 SUPERFAMILY DNA-binding domain 311 380 IPR016177 GO:0003677
Csa02g01870 696 ProSiteProfiles AP2/ERF domain profile. 414 472 IPR001471 GO:0003700|GO:0006355
Csa02g01870 696 SMART rav1_2 414 478 IPR001471 GO:0003700|GO:0006355
Csa02g01870 696 SMART rav1_2 312 384 IPR001471 GO:0003700|GO:0006355
Csa02g01870 696 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 17 649 - -
Csa02g01870 696 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01870 Csa-Chr2:17788116 Csa03g02829 Csa-Chr3:27057687 1.84E-133 dispersed
Csa06g02953 Csa-Chr6:25565842 Csa02g01870 Csa-Chr2:17788116 1.34E-09 dispersed
Csa06g02246 Csa-Chr6:20181470 Csa02g01870 Csa-Chr2:17788116 2.78E-10 transposed
Csa02g01870 Csa-Chr2:17788116 Csa04g02504 Csa-Chr4:24869562 2.82E-179 wgd
Csa02g01870 Csa-Chr2:17788116 Csa06g03048 Csa-Chr6:26200005 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30977 PF00847 AP2 1.60E-13 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01870 K09285 - csv:101212797 1315.44