Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01879 ATGGTGGAGTTGACATGTGAAGTTTTCCAACATATTCATCTTCAGTTTTCTCAAAAGGGTTTTTCCAAAATGCCGATGTACCAGCCTGCTACTACTTGGAGAGAAGGGGATCCGAAGCTCGTCGTTGGCTGCGGTACGCAGATCCTAGATCTGGAAACTGTGGTCAAAGATGGGATTCTCGGTGGAGGCGGTGGGATCATTTGCGGAGGCGGAGGCGGTGGGGGTGGAGAGAAATTGGATCTGAAGGAGATGATTGAGGAGTTGGAATCGTCTGTAGAGGTTCCATCGGTGTTCATTTGTCCAATCTCTCTCGAGCCCATGCAAGATCCAGTGACCCTCTGCTCAGGCCAAACCTACGAGCGGTCTAACATTCTGAAATGGTTCTCTTTGGGGCATTTAACTTGTCCCACAACAATGCAAGAGCTTTGGGACGATTCCGTCACACCGAATCGGACCCTTCACCAGTTGATTCACACCTGGTTTTCCCAGAAGTATTTAGCATTGAAGAAGAGATCAGAGGATGTGCAAGGGAGAGTTTTAGAGCTTTTGGATTCGTTGAAAAAGGTCAAAGGTCAAGCTAGGGTTCAGTCCCTCAAAGATCTCCGACATATCGTCATTACCCATTCCTCCGCTAAGAAGATGGTGGTTGACAACGGCGGTGTCGCTCTAATATCTTCTCTTTTGGGTTCTTTCACTTCCCACGCAGTCGGGTCCGAAGCCGTGGGAATCCTGGTGAATTTAGATCTAAATTCAGAGTTAAAGAAGAATCTGATTCAACCCACCAGAATATCTCTAATTGCAGATATATTAAATGAAGGGTCCATCGAAACCAAGATTAATTGTACGAAATTCTTCAAGATGTTGATCGTGGGTGAGGATTTAAAAACGGAGGACGTTTCGAGTTTAAGTCTCCTCGTCGGATTGTTGAGAATGGTGAAGGATCAGAGACACCCAAATGGTGTAACCGCCGGACTCAGTCTACTCCGAACACTCTGTTCAAACGAACCAATCAGGAAGCAACTCGTTAGCATCGGCGCCGTTGCGAAACTCGGCGGCACCCTCTCTAACTTAAACACCGATTGCTTGGAATCGGCGCTTTATATTCTCGACGTTTTGTCATCCCTTCCAGAGGGGAGATTAGCGTTGAAGAATTGTGAAGATACGATTAGAAATTTGGTGAAATTGTTGATGAAAGTATCAGAGATTTGTACTCAATTTGCGTTGTCGATTTTATGGGCAGTGTTCAAGCTAGCACCAGAGGAATGTGCGGTGCTCGCAGTGGAAGCTGGATTAGCAGCAAAATTGCTGCTTGTAATACAAAGTGGGTGCAATCCAGAGCTGAAACAGAGATCTGCAGAGCTATTAAAATTGTGTAGTCTAAATTACCCAGATTCAATCTTCATTTCTAAATGTAAGCTTACGAGAACTATACAATAA 1437 45.23 MVELTCEVFQHIHLQFSQKGFSKMPMYQPATTWREGDPKLVVGCGTQILDLETVVKDGILGGGGGIICGGGGGGGGEKLDLKEMIEELESSVEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRHIVITHSSAKKMVVDNGGVALISSLLGSFTSHAVGSEAVGILVNLDLNSELKKNLIQPTRISLIADILNEGSIETKINCTKFFKMLIVGEDLKTEDVSSLSLLVGLLRMVKDQRHPNGVTAGLSLLRTLCSNEPIRKQLVSIGAVAKLGGTLSNLNTDCLESALYILDVLSSLPEGRLALKNCEDTIRNLVKLLMKVSEICTQFALSILWAVFKLAPEECAVLAVEAGLAAKLLLVIQSGCNPELKQRSAELLKLCSLNYPDSIFISKCKLTRTIQ* 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17861302 17868301 - CsaV3_2G025990.1 Csa02g01879 519936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01879 478 SUPERFAMILY ARM repeat 168 464 IPR016024 -
Csa02g01879 478 SUPERFAMILY RING/U-box 90 164 - -
Csa02g01879 478 SMART Ubox_2 97 160 IPR003613 GO:0004842|GO:0016567
Csa02g01879 478 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 66 477 - -
Csa02g01879 478 Gene3D - 167 475 IPR011989 -
Csa02g01879 478 PANTHER WDSAM1 PROTEIN 66 477 IPR045185 GO:0061630
Csa02g01879 478 CDD RING-Ubox_PUB 98 140 IPR045210 -
Csa02g01879 478 Pfam U-box domain 94 164 IPR003613 GO:0004842|GO:0016567
Csa02g01879 478 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 166 IPR013083 -
Csa02g01879 478 ProSiteProfiles U-box domain profile. 93 167 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01879 Csa04g02494 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01879 Csa-Chr2:17861302 Csa03g01844 Csa-Chr3:14148559 2.36E-40 dispersed
Csa02g01879 Csa-Chr2:17861302 Csa04g02494 Csa-Chr4:24811770 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01879 - - csv:101211594 891.723