Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01881 ATGGAGGACGCCTACGCCAGATCCATTACTGAGGTTTTGGATTTCTTTGGGGTTGACCCATCACAAGGTCTCACAGATGATCAGGTTTTACATCATGCTAAACTCTATGGAAAAAACTTGGTACCTGAGGAGAAAAGGGCCCCATTTTGGAAATTGGTTTTGAAGCAGTTTGATGATTTACTAGTGAAGATATTAATTGTTGCAGCAGTTGTTTCTTTCCTTTTGGCTTTGATAAATGGAGAGACAGGTGTAACAGCGTTTTTGGAGCCTTCGGTAATTCTAATGATATTGGCTGCAAATGCAGCAGTAGGAGTGATTACGGAAACAAATGCTGAAAAGGCTCTTGTGGAACTACGAGCATACCAGGCAGATATTGCTACTGTGTTGAGAAATGGTTGCTTTTCAATACTTCCGGCTACTGACCTTGTTCCTGGCGATATTGTAGAAGTTGCTGTGGGGTACAAAATTCCAGCTGATATGAGAATGATTGAGATGATGACTAGTCAGTTACGTGTGGATCAAGCAATTCTCACAGGTGAAAGTTGCTCTGTTGAAAAAGAGCTTGAGTCCACTAGAGCAGCAAATGCTGTATATCAAGACAAGACAAATATTCTTTTTTCTGGTACAGTGGTGGTTGCTGGCAGGGCGCGTGCTATTGTGGTAGGAGTTGGTGCAAATACTGCCATGGGCAATATACGGGATTCTATATTGCAAACAGATGACGATGTGACACCGTTGAAAAAGAAGCTTGATGAATTTGGTACCTTTCTGGCTAAGGTTATTGCTGGAATTTGTGCACTTGTATGGATAGTGAACATTGGTCACTTTCGTGATCCTTCACATGGTGGGGTTTTGAGTGGTGCTATACACTACTTCAAGATTGCAGTTGCTCTTGCTGTTGCGGCAATTCCTGAAGGACTTCCTGCTGTCGTCACAACGTGTTTGGCTCTTGGCACCAAACGAATGGCACGTCTGAGTGCAATTGTGAGGTCTTTGCCTTCTGTTGAAACTTTAGGCTGCACTACTGTTATATGTAGTGACAAAACTGGAACTTTGACTACCAATATGATGTCTGTCTCAAAGATTTGTGTGGTCCATTCTGTTGTGCATGGTCCACAACTTTCTGAGTACAATGTCAGTGGTACAACATATGCTCCTGATGGTATTATTTTTGACAACACAGGAGTCCAGCTTGAGATTCCAGCTCAATTGCCTTGTATTCTACATATGGCGATGGGGTCTGCCCTCTGCAACGAGTCTACTTTGCAATATAATCCAGACAAGGGAAGCTATGAAAAAATTGGTGAATCAACTGAAGTAGCACTGCGTGTCTTTGCTGAAAAGGTTGGGCTTCCTGGTTTTACTTCTATGCCTTCTGCTCTAAACATGCTCAGCAAGCATGAGCGTGCATCCTATTGTAACCACCATTGGGAGAGCCAATTCAAAAAGATTTCCATATTGGATTTTTCTCGCGATCGGAAGATGATGAGCATTTTGTGTAGCAGAAACCAGTCACATATCCTATTCTCGAAGGGTGCTCCTGAGAGCATTATTTCAAGATGCTCAAGTATCCTTTGTAACGAAGATGGTTCCACGACCGTTTTAACTTCCAGCGTTCGCATTGAACTGGAAGCAAGATTTCAAAGTTTTGCAGGAAATGAAATGCTTAGGTGCCTGGCTATAGCATTCAAATTGCTTCCGTTGAATCAGCAGAGTTTATCCTTTGACGATGAGAAAGATCTAACATTCATTGGGTTGGTTGGAATGCTTGATCCACCGAGAGAGGAAGTGAGAAATGCTATGCTCTCATGCATGACTGCCGGCATACGTGTTATAGTTGTAACTGGAGACAATAAGTCAACTGCTGAATCGCTCTGTCGCAAGATTGGTGCTTTCGATCACTTGGTAGATCTAACTGGCCATTCGTATACTGCTTCTGAATTTGAAGAGCTACCTGCAATGCAAAAAACAATGGCATTGCAACGAATGGCACTCTTCACCAGGGTTGAACCTTCTCATAAGAGAATGCTTGTGGAGGCCTTGCAACATCAAAATGAAGTGGTTGCTATGACAGGTGATGGCGTCAATGATGCACCTGCACTGAAGAAAGCAGATATTGGAATTGCCATGGGTTCAGGAACAGCGGTTGCCAAGAGTGCTTCTGATATGGTCTTAGCTGATGACAATTTTGCTACTATTGTTGCGGCTGTTGCAGAGGGCAGAGCTATTTACAATAATACCAAGCAGTTCATCAGATACATGATCTCTTCAAATATTGGTGAAGTAGTTTGTATCTTTGTAGCAGCTGTTCTTGGAATACCAGAAACACTTGCCCCCGTGCAACTTCTTTGGGTTAACTTGGTCACTGATGGGTTGCCTGCAACTGCAATTGGATTTAACAAGCAAGACTCTGATGTAATGAAAGCTAAGCCTCGGAAGGTGAATGAAGCTGTGGTGACTGGATGGTTGTTCTTCCGTTATTTGGTAATCGGAGCTTATGTTGGTCTTGCAACAATTGCTGGCTTCATATGGTGGTTTATATACTCTGACAATGGTCCTAAGTTAACTTACACTGAGTTGATGAATTTTGATACTTGTTCAACCAGAGAGACGACGTACCCTTGCAGTATATTTGAGGATCGACATCCTTCGACTGTGTCCATGACTGTGCTTGTTGTTGTCGAGATGTTCAATGCTTTAAATAATCTAAGTGAAAATCAATCTCTTCTTGTTATTCCTCCGTGGAGTAATTTATGGCTCGTTGCCTCCATTGTCTTAACCATGATCCTACACATGCTTATTATGTATGTGCAACCTCTCGCTGTTCTTTTCTCTGTAACACCACTATCTTGGGCTGAATGGTCGATGGTTTTGTATCTTTCATTTCCTGTTATTATCATCGATGAGGTATTGAAGTGCTTTTCACGACGCTCCAGTAGCACTGGCAGGTTGAGGCTTCCATTCAGATTCAGAAGGCACGAATTACTTCCAAAGAAGGAATTACATGACAAGTAG 3015 42.52 MEDAYARSITEVLDFFGVDPSQGLTDDQVLHHAKLYGKNLVPEEKRAPFWKLVLKQFDDLLVKILIVAAVVSFLLALINGETGVTAFLEPSVILMILAANAAVGVITETNAEKALVELRAYQADIATVLRNGCFSILPATDLVPGDIVEVAVGYKIPADMRMIEMMTSQLRVDQAILTGESCSVEKELESTRAANAVYQDKTNILFSGTVVVAGRARAIVVGVGANTAMGNIRDSILQTDDDVTPLKKKLDEFGTFLAKVIAGICALVWIVNIGHFRDPSHGGVLSGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLSAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVVHSVVHGPQLSEYNVSGTTYAPDGIIFDNTGVQLEIPAQLPCILHMAMGSALCNESTLQYNPDKGSYEKIGESTEVALRVFAEKVGLPGFTSMPSALNMLSKHERASYCNHHWESQFKKISILDFSRDRKMMSILCSRNQSHILFSKGAPESIISRCSSILCNEDGSTTVLTSSVRIELEARFQSFAGNEMLRCLAIAFKLLPLNQQSLSFDDEKDLTFIGLVGMLDPPREEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLVDLTGHSYTASEFEELPAMQKTMALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPETLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVTGWLFFRYLVIGAYVGLATIAGFIWWFIYSDNGPKLTYTELMNFDTCSTRETTYPCSIFEDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVASIVLTMILHMLIMYVQPLAVLFSVTPLSWAEWSMVLYLSFPVIIIDEVLKCFSRRSSSTGRLRLPFRFRRHELLPKKELHDK* 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17868741 17891053 - CsaV3_2G026010.1 Csa02g01881 519938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01881 1004 Gene3D - 342 735 IPR023214 -
Csa02g01881 1004 Gene3D - 355 592 IPR023299 GO:0000166
Csa02g01881 1004 SMART Cation_ATPase_N_a_2 3 77 IPR004014 -
Csa02g01881 1004 CDD P-type_ATPase_SERCA 5 976 - -
Csa02g01881 1004 SFLD p-type atpase 327 743 IPR044492 -
Csa02g01881 1004 Pfam Cation transporter/ATPase, N-terminus 6 72 IPR004014 -
Csa02g01881 1004 Pfam Cation transporting ATPase, C-terminus 775 974 IPR006068 -
Csa02g01881 1004 Gene3D - 55 976 - -
Csa02g01881 1004 PRINTS H+-transporting ATPase (proton pump) signature 663 679 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g01881 1004 PRINTS H+-transporting ATPase (proton pump) signature 691 707 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g01881 1004 PRINTS H+-transporting ATPase (proton pump) signature 722 747 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g01881 1004 PANTHER CALCIUM-TRANSPORTING ATPASE 2 983 - -
Csa02g01881 1004 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 977 IPR023298 -
Csa02g01881 1004 SFLD C1.7: P-type atpase like 327 743 - -
Csa02g01881 1004 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 352 589 IPR023299 GO:0000166
Csa02g01881 1004 SUPERFAMILY Calcium ATPase, transduction domain A 124 235 IPR008250 -
Csa02g01881 1004 Pfam haloacid dehalogenase-like hydrolase 677 730 - -
Csa02g01881 1004 Pfam Cation transport ATPase (P-type) 415 524 - -
Csa02g01881 1004 Pfam E1-E2 ATPase 122 324 - -
Csa02g01881 1004 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 661 779 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g01881 1004 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 92 366 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g01881 1004 SUPERFAMILY HAD-like 343 794 IPR036412 -
Csa02g01881 1004 PANTHER SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 3 2 983 - -
Csa02g01881 1004 ProSitePatterns E1-E2 ATPases phosphorylation site. 347 353 IPR018303 -
Csa02g01881 1004 Gene3D - 22 237 - -
Csa02g01881 1004 TIGRFAM ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type 53 845 IPR005782 GO:0005388|GO:0006816|GO:0016021
Csa02g01881 1004 PRINTS P-type cation-transporting ATPase superfamily signature 173 187 - -
Csa02g01881 1004 PRINTS P-type cation-transporting ATPase superfamily signature 345 359 - -
Csa02g01881 1004 PRINTS P-type cation-transporting ATPase superfamily signature 585 596 - -
Csa02g01881 1004 PRINTS P-type cation-transporting ATPase superfamily signature 607 617 - -
Csa02g01881 1004 PRINTS P-type cation-transporting ATPase superfamily signature 691 710 - -
Csa02g01881 1004 PRINTS P-type cation-transporting ATPase superfamily signature 714 726 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01881 Csa-Chr2:17868741 Csa07g01678 Csa-Chr7:17247587 6.63E-97 dispersed
Csa01g02374 Csa-Chr1:20923187 Csa02g01881 Csa-Chr2:17868741 0 transposed
Csa02g01881 Csa-Chr2:17868741 Csa06g03028 Csa-Chr6:26063517 9.54E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01881 K05853 - csv:101211345 1952.56