Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01891 ATGCTGTGCGCTTGTTCAGGAGAGCAATTCAAGTTTGAAGAGCCACCGCAGTCCCCAGAGTCACTTGCGACGAGAGATTTCTCGGCCAGTTGCCTTTCCTCGAGAACTGGAGACTGGGATTTAAAATTTGAAGATTCTCAAGTAGATGAAGTTGAATCCACTTTAAGAGAAGCCCTCTCATTAAACTACGAGGAAGCCCGAGCTTTACTGGGGAGGCTTGAATATCAAAGGGGAAATTTTGATGCTGCTCTACAGGTTTTTCAAGGTATAGACATTAAATCTTTGACGCCAAGAATGGTTAAGGCAATTACTGAAAAGACAAGGGAGGAAAAACCTCGTCCTAAAGGTGACAGTACCGCCCCCCCTAGTGGTGTAATGTCCATGCATTCCGTTAGCCTACTACTTGAAGCAATTTTACTCAAGGCAAAATCGCTGGAAGAACTTGGCAGATATATAGAGTCTGCAAAAGAGTGCAGGATAATTCTTGACACGGTGGAATCAGCTCTGCCTAATGGAATGCCCGAGTGCATTGGTGAAGACTGCAAATTGCAGGAAATGTTTCACAGAGCTTTGGAATTACTGCCTACTCTGTGGACTAATGGAGGGTGTCTTGATGAGGCCATAAATGCCTATCGCCGAGTCCTTGTTAAACCATGGAATCTAGATCCAAACAAGTTGGCTGCCATACAGAAAGAATTGGCTGGGACATTACTCTATGGAGGTGTTGAAGCAAGCCTTCCCCTTAAATTTCATGTATTTGGCCCAAGAACACCTAAAAACAATGTAGAAGAAGCAATCCTTCTGCTACTGATACTCGTGAGGAAAGTGGCGATGCAGGAAATAAACTGGGACCCAGAGATTATGAATCATCTGACTTATGCACTTTCTATCACAAGACAATTTGAACTACTCGCTGAGCATGTGGAGCGGATCCTTCCTGGAATATATAGTCGAGCTGAAAGGTGGTACTTTCTTGCCCTATGTTACAATGCAGCAGAACAAAATGAAGCAGCTCTGAACCTTCTAACAAAAGTTTGCGGTTCCTCTGAAGTAAATCACAAGCCCCATTTTCATTCTTTTCTGTTACTTGCAAAATTGTGTTCAGAGGATACAAAATATGCACGCGATGGAATTAAATTTGCTCATATAATGATGAATATGGCCAGTGAACAAAGTAAACATTTCAACCCCGAAGCCCACAAATATTTAGGTATTTGCTATGGGAATGCAGCTAGAGCGTCTGTGTCAGACTCTGAAAGAACTCTTTTCCAAAAAGAATCATTGAACTCTCTACGAATTTCTTCTCTCAGTAGAAGGCATGATCCAGAAGTAATGTTTAACATTAGCTTGGAAAATGCTGTGCAGAGAAATCTTGATGTTGCCTTCTACAGTGCAATGGCGTACTCAAATATGGTGGCTGATGGCTCTGGAAGAGGTTGGAAGTTGTTGACCCTCATACTTTCAGCTGAGAAACGACTCATGGATGCCGAAACCATAGTTGATTTTGCTTTGGATGAAGCTGATAGGATGGACCAATTAGATTTTCTTCGATTGAAAGCTGTCCTCAAAATTGCTCAGGAACAGCCGAAGCAAGCAATAGAAACCTACAGAATCTTGCTAGCACTAATTCAAGCACGAGATGAACATCAGCTTCGGACTAAGAACTTTGACCAATCCAAGGACTTGGAACTGGAGGCAGTGGCAGAACGTAACTTGGAACGGGCAGCCTGGCAGGATTTGGCTGCCATATATTCAAAACTTGCTTCATGGGCGGATGCAGAAATCTGTCTGAACAAAGCCAAGTCATTAGATTTTCATTGCCCCAGAGGTTGGCATACAACAGGCAAGTATTTTGAAGCTCGATCATTACACAAGGAAGCCCTTGTTTCATTCTCTGTCGCTCTATCGATTGATCCCGATTATATTCCAAGTATCATATCAACAGCAGAAGTATTGATGAAATGTGGTAACCAATCACTTCCAATTGCGCGCAGCTTGTTGATGAATGCTGTAAGATTGGATCCTACAAGCCACGAAGCATGGCTCAACCTTGGAATGCTTTCCAAAATGGAAGGTCTTTTGCTACAAGCTGCAGATTTTTTTCAAGCTGCACATGAACTCCAACTATCGGCTCCACCTCAGAGTTTCGTATAG 2154 42.9 MLCACSGEQFKFEEPPQSPESLATRDFSASCLSSRTGDWDLKFEDSQVDEVESTLREALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKSLTPRMVKAITEKTREEKPRPKGDSTAPPSGVMSMHSVSLLLEAILLKAKSLEELGRYIESAKECRIILDTVESALPNGMPECIGEDCKLQEMFHRALELLPTLWTNGGCLDEAINAYRRVLVKPWNLDPNKLAAIQKELAGTLLYGGVEASLPLKFHVFGPRTPKNNVEEAILLLLILVRKVAMQEINWDPEIMNHLTYALSITRQFELLAEHVERILPGIYSRAERWYFLALCYNAAEQNEAALNLLTKVCGSSEVNHKPHFHSFLLLAKLCSEDTKYARDGIKFAHIMMNMASEQSKHFNPEAHKYLGICYGNAARASVSDSERTLFQKESLNSLRISSLSRRHDPEVMFNISLENAVQRNLDVAFYSAMAYSNMVADGSGRGWKLLTLILSAEKRLMDAETIVDFALDEADRMDQLDFLRLKAVLKIAQEQPKQAIETYRILLALIQARDEHQLRTKNFDQSKDLELEAVAERNLERAAWQDLAAIYSKLASWADAEICLNKAKSLDFHCPRGWHTTGKYFEARSLHKEALVSFSVALSIDPDYIPSIISTAEVLMKCGNQSLPIARSLLMNAVRLDPTSHEAWLNLGMLSKMEGLLLQAADFFQAAHELQLSAPPQSFV* 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17922239 17927597 - CsaV3_2G026110.1 Csa02g01891 519948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01891 717 MobiDBLite consensus disorder prediction 105 124 - -
Csa02g01891 717 SUPERFAMILY TPR-like 514 708 IPR011990 GO:0005515
Csa02g01891 717 PANTHER PROTEIN NPG1 1 717 IPR043376 -
Csa02g01891 717 Gene3D Tetratricopeptide repeat domain 29 542 IPR011990 GO:0005515
Csa02g01891 717 Gene3D Tetratricopeptide repeat domain 544 710 IPR011990 GO:0005515
Csa02g01891 717 SUPERFAMILY TPR-like 46 343 IPR011990 GO:0005515
Csa02g01891 717 PANTHER PROTEIN NPGR1 1 717 - -
Csa02g01891 717 ProSiteProfiles TPR repeat profile. 608 641 IPR019734 GO:0005515
Csa02g01891 717 SMART tpr_5 574 607 IPR019734 GO:0005515
Csa02g01891 717 SMART tpr_5 513 546 IPR019734 GO:0005515
Csa02g01891 717 SMART tpr_5 678 711 IPR019734 GO:0005515
Csa02g01891 717 SMART tpr_5 319 352 IPR019734 GO:0005515
Csa02g01891 717 SMART tpr_5 608 641 IPR019734 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01891 Csa-Chr2:17922239 Csa03g02608 Csa-Chr3:24633203 0 dispersed
Csa02g01891 Csa-Chr2:17922239 Csa03g01189 Csa-Chr3:9205046 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01891 K21843 - csv:101209448 1387.86