Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01899 ATGGAGGCTTTGGGAGTTTTTTCCGATGGGGAATGGGAATCTTTCGCCGCCATGTTCTCATCGGAAGAGATAAATCAGACCCATATACCGATGACTAATTGTTGTTCGACTGAGCTTCATCAATTGCCCAACAATGGCGGCGGCGGCGGCAGCAGCAGTTGGTTCTATTCATTGGATGCTTTTGTTCCTAATTTGCAGAGCTATTGTAAACAGGACATTAGGACTTGTTCTAGTGCTTCAGTTTTGATTCCGAATTCGAGTGATTTTTTTATGCCAATTGATGAGAGGAATTTTGGGTCCGAGTTTTTTTCTGATGTTTTAATCGAGGAAGTCAATAATGCCCTCGCCGTCGATGCCGAAGGGGAGGATTCCGGCATGGCGAGATTCATAGAGAATAATGTACAACAAAGTAACCACCCGCCACCGTCGCCGCTTCTAGATTCAGCCTGTGCCGGAAACAAATTACCAATTGCATTGAAAAGGAAAGTCAATAATGGAGACATTTCCGATAATCAGAAGAAGAAAACTCGAACCACCTCAAATGTGCAGAGGAAGAAGAAAACAGAGGATCAGAAGAAGAGAGGGGAAAATGTAGAGGAAGAAGGACAAAGCTCCATTAGTTATAATTCAGACCAGGAAGAGAATAGTTCCGAGGAAGCCAACGGCGGCGGCTCAGGCGCCACCTCTGACGGTGGCGTCAACAGAAAAAGCAGAGCAAGCAGAGGGTCGGCCACCGATCCCCAAAGCCTCTACGCCAGAAAACGAAGGGAAAGAATCAATGAGAGGTTGAGAATATTACAGAAACTTGTTCCAAATGGAACCAAGGTTGATATCAGTACCATGCTTGAAGAAGCAGTTCATTATGTCAAGTTTTTGCAGCTCCAAATCAAGTTGTTGAGCTCAGATGAGATGTGGATGTTTGCTCCTTTGGCTTACAATGGAATGGACATTGGCCTTCAACATAACCTCTCTCCCTTTCTATCTCATTGA 990 44.85 MEALGVFSDGEWESFAAMFSSEEINQTHIPMTNCCSTELHQLPNNGGGGGSSSWFYSLDAFVPNLQSYCKQDIRTCSSASVLIPNSSDFFMPIDERNFGSEFFSDVLIEEVNNALAVDAEGEDSGMARFIENNVQQSNHPPPSPLLDSACAGNKLPIALKRKVNNGDISDNQKKKTRTTSNVQRKKKTEDQKKRGENVEEEGQSSISYNSDQEENSSEEANGGGSGATSDGGVNRKSRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMFAPLAYNGMDIGLQHNLSPFLSH* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17969523 17971339 - CsaV3_2G026190.1 Csa02g01899 519956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01899 329 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 326 - -
Csa02g01899 329 MobiDBLite consensus disorder prediction 182 200 - -
Csa02g01899 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 292 IPR011598 GO:0046983
Csa02g01899 329 MobiDBLite consensus disorder prediction 161 255 - -
Csa02g01899 329 SMART finulus 249 298 IPR011598 GO:0046983
Csa02g01899 329 Pfam Helix-loop-helix DNA-binding domain 253 293 IPR011598 GO:0046983
Csa02g01899 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 243 305 IPR036638 GO:0046983
Csa02g01899 329 PANTHER TRANSCRIPTION FACTOR BHLH84-LIKE 3 326 - -
Csa02g01899 329 Gene3D - 245 308 IPR036638 GO:0046983
Csa02g01899 329 MobiDBLite consensus disorder prediction 201 247 - -
Csa02g01899 329 CDD bHLH_AtIND_like 244 306 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01899 Csa04g02472 CCT
Csa02g01899 Csa04g02472 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01899 Csa-Chr2:17969523 Csa05g01584 Csa-Chr5:18711066 6.15E-26 dispersed
Csa07g00387 Csa-Chr7:2853486 Csa02g01899 Csa-Chr2:17969523 5.39E-13 dispersed
Csa04g01635 Csa-Chr4:15704947 Csa02g01899 Csa-Chr2:17969523 1.96E-21 transposed
Csa02g01899 Csa-Chr2:17969523 Csa04g00038 Csa-Chr4:228607 8.90E-56 wgd
Csa02g01899 Csa-Chr2:17969523 Csa04g02472 Csa-Chr4:24696914 3.07E-62 wgd
Csa02g01899 Csa-Chr2:17969523 Csa07g00687 Csa-Chr7:4913547 1.28E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30981 PF00010 HLH 9.80E-09 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01899 - - csv:101221853 624.394