Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g01899 | ATGGAGGCTTTGGGAGTTTTTTCCGATGGGGAATGGGAATCTTTCGCCGCCATGTTCTCATCGGAAGAGATAAATCAGACCCATATACCGATGACTAATTGTTGTTCGACTGAGCTTCATCAATTGCCCAACAATGGCGGCGGCGGCGGCAGCAGCAGTTGGTTCTATTCATTGGATGCTTTTGTTCCTAATTTGCAGAGCTATTGTAAACAGGACATTAGGACTTGTTCTAGTGCTTCAGTTTTGATTCCGAATTCGAGTGATTTTTTTATGCCAATTGATGAGAGGAATTTTGGGTCCGAGTTTTTTTCTGATGTTTTAATCGAGGAAGTCAATAATGCCCTCGCCGTCGATGCCGAAGGGGAGGATTCCGGCATGGCGAGATTCATAGAGAATAATGTACAACAAAGTAACCACCCGCCACCGTCGCCGCTTCTAGATTCAGCCTGTGCCGGAAACAAATTACCAATTGCATTGAAAAGGAAAGTCAATAATGGAGACATTTCCGATAATCAGAAGAAGAAAACTCGAACCACCTCAAATGTGCAGAGGAAGAAGAAAACAGAGGATCAGAAGAAGAGAGGGGAAAATGTAGAGGAAGAAGGACAAAGCTCCATTAGTTATAATTCAGACCAGGAAGAGAATAGTTCCGAGGAAGCCAACGGCGGCGGCTCAGGCGCCACCTCTGACGGTGGCGTCAACAGAAAAAGCAGAGCAAGCAGAGGGTCGGCCACCGATCCCCAAAGCCTCTACGCCAGAAAACGAAGGGAAAGAATCAATGAGAGGTTGAGAATATTACAGAAACTTGTTCCAAATGGAACCAAGGTTGATATCAGTACCATGCTTGAAGAAGCAGTTCATTATGTCAAGTTTTTGCAGCTCCAAATCAAGTTGTTGAGCTCAGATGAGATGTGGATGTTTGCTCCTTTGGCTTACAATGGAATGGACATTGGCCTTCAACATAACCTCTCTCCCTTTCTATCTCATTGA | 990 | 44.85 | MEALGVFSDGEWESFAAMFSSEEINQTHIPMTNCCSTELHQLPNNGGGGGSSSWFYSLDAFVPNLQSYCKQDIRTCSSASVLIPNSSDFFMPIDERNFGSEFFSDVLIEEVNNALAVDAEGEDSGMARFIENNVQQSNHPPPSPLLDSACAGNKLPIALKRKVNNGDISDNQKKKTRTTSNVQRKKKTEDQKKRGENVEEEGQSSISYNSDQEENSSEEANGGGSGATSDGGVNRKSRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMFAPLAYNGMDIGLQHNLSPFLSH* | 330 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 17969523 | 17971339 | - | CsaV3_2G026190.1 | Csa02g01899 | 519956 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g01899 | 329 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 3 | 326 | - | - | |
Csa02g01899 | 329 | MobiDBLite | consensus disorder prediction | 182 | 200 | - | - | |
Csa02g01899 | 329 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 243 | 292 | IPR011598 | GO:0046983 | |
Csa02g01899 | 329 | MobiDBLite | consensus disorder prediction | 161 | 255 | - | - | |
Csa02g01899 | 329 | SMART | finulus | 249 | 298 | IPR011598 | GO:0046983 | |
Csa02g01899 | 329 | Pfam | Helix-loop-helix DNA-binding domain | 253 | 293 | IPR011598 | GO:0046983 | |
Csa02g01899 | 329 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 243 | 305 | IPR036638 | GO:0046983 | |
Csa02g01899 | 329 | PANTHER | TRANSCRIPTION FACTOR BHLH84-LIKE | 3 | 326 | - | - | |
Csa02g01899 | 329 | Gene3D | - | 245 | 308 | IPR036638 | GO:0046983 | |
Csa02g01899 | 329 | MobiDBLite | consensus disorder prediction | 201 | 247 | - | - | |
Csa02g01899 | 329 | CDD | bHLH_AtIND_like | 244 | 306 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa02g01899 | Csa04g02472 | CCT | |
Csa02g01899 | Csa04g02472 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01899 | Csa-Chr2:17969523 | Csa05g01584 | Csa-Chr5:18711066 | 6.15E-26 | dispersed | |
Csa07g00387 | Csa-Chr7:2853486 | Csa02g01899 | Csa-Chr2:17969523 | 5.39E-13 | dispersed | |
Csa04g01635 | Csa-Chr4:15704947 | Csa02g01899 | Csa-Chr2:17969523 | 1.96E-21 | transposed | |
Csa02g01899 | Csa-Chr2:17969523 | Csa04g00038 | Csa-Chr4:228607 | 8.90E-56 | wgd | |
Csa02g01899 | Csa-Chr2:17969523 | Csa04g02472 | Csa-Chr4:24696914 | 3.07E-62 | wgd | |
Csa02g01899 | Csa-Chr2:17969523 | Csa07g00687 | Csa-Chr7:4913547 | 1.28E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30981 | PF00010 | HLH | 9.80E-09 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g01899 | - | - | csv:101221853 | 624.394 |