Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01900 ATGAAAGCAGTCTTCGATCTCACTTCCTCACTTCCTCTTTCCCCTTCACCCTCGCACTACTGCAGGACCACCGCCATCTTCACTCCTTCTCGTGATCTCATTGCATCTACCTCAACAGCCCTCGGCGGCGCTTTCTCGTCTTGTCGTACACATTTGACTCACTTTCCACACCATACATCTTCTTTCTCTCCTCTGCGATGCAATGTGAGGAAGACGGTGCCGGATCAAGTAATGGCGCCCACCGATAAACAAGACCCACGCATACCCAAAATCTCCAAGGCCATTCGAGTTATCCCAGATTTTCCTAAACCAGGGATTTTGTTTCAGGATATTACAACTTTGCTTCTTGATACAAAGGCCTTCAAGGACACTATCGATTTGTTCGTGGAGAGGTACAGAGGGAAGGATATCTCTGTCGTCGCTGGAATTGAGGCGAGGGGTTTCATTTTTGGCCCTCCGATAGCTCTGGCTATTGGTGCAAAATTCGTGCCCATGAGAAAACCCAAGAAGTTGCCTGGTGAAGTCATTTCAGAAGAGTACTCTTTAGAGTATGGAACTGATAAAATAGAGATGCATGTGGGAGCTGTTGAAGCTGGAGAACGTGCTCTTGTGATAGATGATCTCATTGCAACTGGAGGAACCTTGTGTGCAGCAATAAGGCTACTTGAGCGAGTTGGCGTTGAGGTGGTCGAGTGTGCATGTGTGATCGAGCTGGATGGACTAAAGGGCCGTGAACGATTGGGAGACAAACCTCTATTCGTTCTAGTTAATGCAGAGGGATGA 783 47.89 MKAVFDLTSSLPLSPSPSHYCRTTAIFTPSRDLIASTSTALGGAFSSCRTHLTHFPHHTSSFSPLRCNVRKTVPDQVMAPTDKQDPRIPKISKAIRVIPDFPKPGILFQDITTLLLDTKAFKDTIDLFVERYRGKDISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVEAGERALVIDDLIATGGTLCAAIRLLERVGVEVVECACVIELDGLKGRERLGDKPLFVLVNAEG* 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17979681 17983315 - CsaV3_2G026200.1 Csa02g01900 519957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01900 260 PANTHER BNAA09G27900D PROTEIN 81 258 - -
Csa02g01900 260 Hamap Adenine phosphoribosyltransferase [apt]. 91 258 IPR005764 GO:0003999|GO:0005737|GO:0006168
Csa02g01900 260 CDD PRTases_typeI 125 255 IPR000836 -
Csa02g01900 260 SUPERFAMILY PRTase-like 92 254 IPR029057 -
Csa02g01900 260 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 81 258 - -
Csa02g01900 260 Gene3D - 78 260 IPR029057 -
Csa02g01900 260 Pfam Phosphoribosyl transferase domain 130 244 IPR000836 -
Csa02g01900 260 TIGRFAM apt: adenine phosphoribosyltransferase 92 257 IPR005764 GO:0003999|GO:0005737|GO:0006168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01900 K00759 APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7] - csv:101208231 509.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01900 Csa-Chr2:17979681 Csa05g00402 Csa-Chr5:2627784 1.26E-96 dispersed
Csa02g01900 Csa-Chr2:17979681 Csa03g00299 Csa-Chr3:2520811 6.02E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g660 . . . . . . . . Cmo05g00147 Cmo12g00534 . . . Car12g00538 Sed10g1207 . . Bhi04g00409 Tan02g1743 Cmetu03g0036 . Hepe08g1328 . Lcy13g2129 Cla08g01616 Cam08g2118 Cec08g1703 Cco08g1826 Clacu08g1803 . Cre08g1585 . . . Cone20ag0230 . . . Cme03g02097 Blo17g00861 . . . . Bpe05g00045 . Bma05g00056 . . . Cma12g00594 Cma05g00145 Car05g00126 . . . . . . . . . . . . . . . . . Lsi08g01520 Csa02g01900 Chy03g01586 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02398 . 33 189 PRT Gene Family AT1G80050 78.3 4.0e-66 247.7
Csa03g00299 . 77 227 PRT Gene Family AT1G80050 75.5 9.3e-63 236.5
Csa05g00402 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Csa02g01900 . 107 256 PRT Gene Family AT1G80050 70.7 8.4e-56 213.4
Csa02g02398 . 1 148 PRT Gene Family AT5G11160 79.7 7.4e-63 236.9
Csa05g00402 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Csa02g01900 . 83 222 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Csa03g00299 . 55 192 PRT Gene Family AT5G11160 72.5 1.4e-53 206.1
Csa02g01900 . 78 258 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Csa03g00299 . 51 227 PRT Gene Family AT1G27450 75.1 1.3e-73 272.7
Csa05g00402 . 7 180 PRT Gene Family AT1G27450 73.6 1.6e-71 265.8
Csa02g02398 . 11 183 PRT Gene Family AT1G27450 68.8 3.5e-66 248.1
Csa02g01318 . 74 558 PRT Gene Family AT2G16570 85.0 1.0e-241 832.8
Csa02g01318 . 73 558 PRT Gene Family AT4G34740 85.4 1.6e-242 835.5
Csa02g01318 . 30 531 PRT Gene Family AT4G38880 70.7 3.5e-199 691.4
Csa02g01900 . 78 258 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Csa03g00299 . 51 227 PRT Gene Family AT1G27450 75.1 1.3e-73 272.7
Csa05g00402 . 7 180 PRT Gene Family AT1G27450 73.6 1.6e-71 265.8
Csa02g02398 . 11 183 PRT Gene Family AT1G27450 68.8 3.5e-66 248.1
Csa02g02398 . 33 189 PRT Gene Family AT1G80050 78.3 4.0e-66 247.7
Csa03g00299 . 77 227 PRT Gene Family AT1G80050 75.5 9.3e-63 236.5
Csa05g00402 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Csa02g01900 . 107 256 PRT Gene Family AT1G80050 70.7 8.4e-56 213.4
Csa03g00299 . 51 144 PRT Gene Family AT4G22570 87.2 3.7e-44 174.1
Csa05g00402 . 6 104 PRT Gene Family AT4G22570 80.8 1.4e-43 172.2
Csa02g01900 . 82 174 PRT Gene Family AT4G22570 80.6 1.6e-39 158.7
Csa02g02398 . 11 100 PRT Gene Family AT4G22570 77.8 4.4e-37 150.6
Csa03g00299 . 52 143 PRT Gene Family AT4G12440 87.0 4.6e-41 163.7
Csa05g00402 . 1 96 PRT Gene Family AT4G12440 82.3 2.3e-40 161.4
Csa02g01900 . 78 173 PRT Gene Family AT4G12440 79.2 4.8e-38 153.7
Csa02g02398 . 1 148 PRT Gene Family AT5G11160 79.7 7.4e-63 236.9
Csa05g00402 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Csa02g01900 . 83 222 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Csa03g00299 . 55 192 PRT Gene Family AT5G11160 72.5 1.4e-53 206.1
Csa06g00490 . 1 186 PRT Gene Family AT1G71750 64.5 1.1e-68 256.5
Csa07g01059 . 16 468 PRT Gene Family AT1G55810 85.4 3.1e-225 777.7
Csa03g02052 . 19 482 PRT Gene Family AT1G55810 73.1 4.3e-198 687.6
Csa07g01059 . 65 467 PRT Gene Family AT3G27440 77.2 1.5e-184 642.5
Csa03g02052 . 80 482 PRT Gene Family AT3G27440 75.2 1.2e-178 622.9
Csa03g02052 . 1 483 PRT Gene Family AT3G27190 86.0 7.7e-246 846.3
Csa07g01059 . 3 467 PRT Gene Family AT3G27190 74.2 8.3e-208 719.9
Csa04g01535 . 3 289 PRT Gene Family AT3G53900 66.6 3.0e-107 385.2
Csa07g01059 . 1 468 PRT Gene Family AT4G26510 84.5 3.6e-232 800.8
Csa03g02052 . 11 482 PRT Gene Family AT4G26510 75.4 4.3e-209 724.2
Csa03g02052 . 1 482 PRT Gene Family AT5G40870 85.9 5.0e-245 843.6
Csa07g01059 . 3 470 PRT Gene Family AT5G40870 73.4 2.4e-207 718.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139