Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01907 ATGGCTTCAAGTTTCGATCGATGGGAAAAGGATTCGTTTTTCTCAGCCGCTGAGGAAGTTCAAGAATCTGCCGATAGAGTAGAATCGACGTATAGAACGTGGGTACATGCCAAGAAAGATGACTGCAGCATTTGGAACTGTGAGGAGCTCGGTAGGGATTTACGCACTGCTCTTGGCACCACCAAATGGCAGTTAGAGGAGTTTGAACGAGCTGTGAAAGCAAGTTATGTTAATAACTCAAATGATGATGCGAGAGATAGGCACCGGGAATTTATTTTAGCAATTGAGGATCAGATTTCAAAAACTCAAAGTTCAGTACAAGAGTTATCTCAATCAAAGGGAAAACCCTCGATGCCTTGGATGAGGCTGGATGAAGGTGAAAGTGAAGAACTAGCGATGTTTCTTTCAGGACCTTCAGCAGCTGAAAACAAAACTGCTGTTAACAATGTTGTTAGTAACAACGAGAACCCACATGGGAAGAATGAAGAATCAGCACCGGCTTGTTCAATTAATTCTCATCAACCAGTTGAGCAGGGTTCTCACGGTGACAGAGATGAGAAGTCCCATGGACACCGGAGGACAGCTAGCGCTAGTCCTGACATTGGTTCCTGGAAGATTGCAATTTCGGGAGTTGATTTCCAACAATGTCCTCTAAATGGAGAAACCCAGAAACTTGTACGAAAGATCCCAAGTTTTTCAGGGTTTTTAAATAGTGTTGAGTCTGCGTCAAATTTCAAGTGGCCAAAGAATGGCTTTAGGAAGTTGAAAGTATTAGATAGGCATCAAGAAACGAATTCAAAATTGCAATCCCCTCAATCAGCTAGGGGTATAAATGTTGGATATGAAAGAAATAAGAGTTGCTTGGATAGTTGTGATGATTTTTATGATAAGCAACTCTATGGCTGGTATGGATCTATTAAAAGACAGTTTCAGAGGTCTATATATCAAATGCAGTATAATAGGCCTGTTCAAGTGACACTTTCAACAGTTCTTATTGTCTCACTTGTTTTGGTTTTACTTCGTGTGCTGTAA 1032 41.09 MASSFDRWEKDSFFSAAEEVQESADRVESTYRTWVHAKKDDCSIWNCEELGRDLRTALGTTKWQLEEFERAVKASYVNNSNDDARDRHREFILAIEDQISKTQSSVQELSQSKGKPSMPWMRLDEGESEELAMFLSGPSAAENKTAVNNVVSNNENPHGKNEESAPACSINSHQPVEQGSHGDRDEKSHGHRRTASASPDIGSWKIAISGVDFQQCPLNGETQKLVRKIPSFSGFLNSVESASNFKWPKNGFRKLKVLDRHQETNSKLQSPQSARGINVGYERNKSCLDSCDDFYDKQLYGWYGSIKRQFQRSIYQMQYNRPVQVTLSTVLIVSLVLVLLRVL* 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18010062 18013370 + CsaV3_2G026270.1 Csa02g01907 519964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01907 343 MobiDBLite consensus disorder prediction 150 177 - -
Csa02g01907 343 PANTHER OS05G0443700 PROTEIN 1 341 - -
Csa02g01907 343 PANTHER EXPRESSED PROTEIN 1 341 - -
Csa02g01907 343 MobiDBLite consensus disorder prediction 178 194 - -
Csa02g01907 343 Pfam Syntaxin 6, N-terminal 11 101 IPR015260 GO:0016020|GO:0048193
Csa02g01907 343 MobiDBLite consensus disorder prediction 150 201 - -
Csa02g01907 343 Gene3D - 9 109 - -
Csa02g01907 343 SUPERFAMILY t-snare proteins 10 108 IPR010989 GO:0016020|GO:0016192
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01907 - - - csv:101221387 664.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00629 Csa-Chr2:4648913 Csa02g01907 Csa-Chr2:18010062 2.84E-38 dispersed
Csa02g01907 Csa-Chr2:18010062 Csa01g02149 Csa-Chr1:18654172 3.92E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g674 . . . . . . . . Cmo05g00152 Cmo12g00523 . . . . Sed11g0927 . Cpe07g00508 Bhi04g00402 Tan02g1760 Cmetu03g1564 . Hepe08g1320 . Lcy13g2123 Cla08g01609 Cam08g2110 Cec08g1695 Cco08g1819 Clacu08g1795 . Cre08g1578 Cone4ag1608 Cone7ag1344 Cone17ag0875 Cone20ag0223 . . . Cme03g02090 Blo17g00868 Blo18g00713 . Bda01g01595 Bpe02g01782 Bpe05g00037 Bma01g00672 Bma05g00048 . . . Cma12g00586 Cma05g00152 Car05g00132 . Cpe11g00128 . . . . . . . . . . . . . . . Lsi08g01513 Csa02g01907 Chy03g01579 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003617 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 3 1 47