Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01911 ATGTTTCAGTTCGTCGGGTTGTTTCTTCACTTCCTTGACCAACTTCTTCTACTTTTCCCACTAATAATAATCATCATCTTCCTCCTCCTCCGTTTCCTTCGATCCAATAACCCTGGCCAGAGGCGGCTCCCGCCGAGCCCGCCTGGGGGTTCCTTCCCCATTCTTGGTCATCTTAATCTCCTCAAGAACCCCCTCCACCGCACCCTCGCAAAACTCTCCGCCAAACACGGCCCCATTCTTCTCCTCCACTTCGGCTCCCGCCCCGTCCTCCTAATCTCCTCCCCATCCGCCGCGCAAGAATGTCTAACCAAAAACGACATTGCTTTTGCCTCCCGCCCTCGCCTCTCCGTCGGAAAACACCTTGGCTGCAATTACACAAACATCCTTTGGGCCCCCTATGGACCCCATTGGCGCAACCAAAGACGCATCGCCACCCTCCAGATTCTCTCACCCGCCCGAATCCATATGTACGGTAGCGTGAGAACAGAGGAAGTGAAGTTCTTGATTCGCAGGCTGTGCGGAGGCACTGGAGAAAATGGGTTTCGAATGGTGGAGATGAAGAAGGTGTTTTTCGAGACGGTTCTTAATGTGATGATGAGGATGATCGCTGGTAAGCGGTATTGCGGGGAGAGAGAATCGGAGGAAGCAGAGAGATTCAGAGAGATTGTGAAAGAAGGGTTTAAAGTGAGTGGGGCTACGAATATGGGGGACTTTCTGCCAAATTTTTTGAAATGGGTTGGGTTGTGGAGTGGAATTGAGAAAAGGATGGAGAGATTACAAGGTTTGAGAGATGGGTTTATGCAGAATTTGATTGAGGAACGACGAAGGATGAGAAGGGATAAAGGAGATGAAATGAAAGAATCCAGAGTAATGGCGGATGTTCTTTTGGATTTGCAACAAACTGAACCTCACTATTATACGGATGCTTTCATTCGAGGCATGATGCAAGGGATGCTATCAGCAGGGACAGACACATCATCAGCAACAATGGAATGGGCATTTTCACTACTACTCAACCACCCTAATTCTCTCCTCAAAGTTCAAGAAGAAATCGACACCCACGTGGGTCCAAACAGACTCCTTCAAGAATCCGATCTCTCAAACCTACCCTTCCTCAACTCTGTTCTCAAAGAGACCCTCCGCATTTACCCAGTCGCCCCATTGCTGGTTCCTCACGAGTCCTCCCAAGACTGCGTCGTTGGAGGCTTCCACGTGCCTCGCGGCACAATGTTGCTTGTAAACAACTGGGCCATTCAAAACGACAGTGATTCATGGCCGGACCCAGCAGAGTTTAAGCCGGAGAGGTTCCAGGATGCAGGGGAAGTGGAGGAGGGGTTGCGGTGGCTGCCGTTTGGGGCGGGGCGGAGGGGTTGTCCCGGCGAGGGATTGGCTATGCGGATGGTGGGGCTTACTTTGGGGTGTTTGATTCAGTGTTTTGAGTGGCGGAGAGTGGGGGAGGAGATGGTGGATATGAGCGAAGGCGGTGGCCTTACAATGCCCAGAGCCAGACCATTATGGGCCAACTACAGGCCTCGCCCCATTTTACTTCGACTTCTCCCCACCTTTTGA 1569 51.56 MFQFVGLFLHFLDQLLLLFPLIIIIIFLLLRFLRSNNPGQRRLPPSPPGGSFPILGHLNLLKNPLHRTLAKLSAKHGPILLLHFGSRPVLLISSPSAAQECLTKNDIAFASRPRLSVGKHLGCNYTNILWAPYGPHWRNQRRIATLQILSPARIHMYGSVRTEEVKFLIRRLCGGTGENGFRMVEMKKVFFETVLNVMMRMIAGKRYCGERESEEAERFREIVKEGFKVSGATNMGDFLPNFLKWVGLWSGIEKRMERLQGLRDGFMQNLIEERRRMRRDKGDEMKESRVMADVLLDLQQTEPHYYTDAFIRGMMQGMLSAGTDTSSATMEWAFSLLLNHPNSLLKVQEEIDTHVGPNRLLQESDLSNLPFLNSVLKETLRIYPVAPLLVPHESSQDCVVGGFHVPRGTMLLVNNWAIQNDSDSWPDPAEFKPERFQDAGEVEEGLRWLPFGAGRRGCPGEGLAMRMVGLTLGCLIQCFEWRRVGEEMVDMSEGGGLTMPRARPLWANYRPRPILLRLLPTF* 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18031935 18034281 - CsaV3_2G026310.1 Csa02g01911 519968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01911 522 Pfam Cytochrome P450 47 501 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g01911 522 PRINTS E-class P450 group I signature 73 92 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g01911 522 PRINTS E-class P450 group I signature 97 118 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g01911 522 PRINTS E-class P450 group I signature 193 211 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g01911 522 PRINTS E-class P450 group I signature 310 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g01911 522 PRINTS E-class P450 group I signature 330 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g01911 522 PRINTS E-class P450 group I signature 373 391 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g01911 522 PRINTS E-class P450 group I signature 414 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g01911 522 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g01911 522 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g01911 522 PANTHER CYTOCHROME P450 82C3-RELATED 23 519 - -
Csa02g01911 522 PANTHER CYTOCHROME P450 81E8 23 519 - -
Csa02g01911 522 Coils Coil 267 287 - -
Csa02g01911 522 PRINTS P450 superfamily signature 321 338 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g01911 522 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g01911 522 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g01911 522 PRINTS P450 superfamily signature 458 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g01911 522 Gene3D Cytochrome P450 28 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g01911 522 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
Csa02g01911 522 SUPERFAMILY Cytochrome P450 44 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01911 - - - csv:101220916 987.638
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01911 Csa04g02460 CCT
Csa02g01911 Csa04g02460 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01911 Csa-Chr2:18031935 Csa04g02458 Csa-Chr4:24622685 0 dispersed
Csa02g01911 Csa-Chr2:18031935 Csa06g02977 Csa-Chr6:25728642 7.58E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g685 . . . . . . . . . . Cma01g01801 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01505 Csa04g02460 . . . . . . . . . . . . . . . . . . . Bhi09g03251 . . . . . . Cla05g02089 . . . . . . . Csa02g01911 Chy07g00174 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000014 8 19 13 8 6 18 15 17 16 19 16 18 14 17 19 19 18 9 12 19 19 25 15 12 12 20 11 24 18 21 477