Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01915 ATGGCAATTTCTCATCCTCCACTGATTCACTTCATCTGTATTTTCATTTTAGCTTTTGAAGGTTCACTTTTTGATTCCGTTAGATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCATCTCCAACCTTGAATCAGACAAGCAATCTTTGATTTCCCTAAAGTCTGGATTCAATAACCTTAATCTTTACGACCCTTTATCAACTTGGGATCAAAACTCATCTCCTTGCAATTGGACAGGAGTGAGCTGCAATGAAGATGGTGAAAGAGTTGTTGAGCTTGATCTTTCTGGGCTGGGTCTTGCAGGTTTTTTGCATATGCAAATTGGGAATCTTTCATTCCTCACATCACTTCAACTTCAAAACAACCAATTAACAGGCCCAATTCCAATTCAAATTGGCAATCTTTTTCGCTTGAAAGTTTTGAATATGAGCTTCAATTACATAAGAGGTGATCTCCCTTTCAACATCAGTGGAATGACACAGCTTGAGATTCTTGATTTAACTTCAAACAGAATCACAAGCCAAATTCCACAAGAATTCAGCCAATTGACAAAGCTCAAAGTTTTGAACTTGGGACAGAATCATCTCTACGGTACAATTCCCCCATCTTTTGGGAACCTTACTTCTCTCGTCACCTTAAATTTAGGAACTAATTCAGTTAGTGGCTTTATTCCTTCTGAACTGAGTCGTCTTCAAAATTTGAAAAACTTGATGATTTCCATTAATAATTTCAGTGGCACTGTTCCCTCTACCATTTACAACATGTCTTCATTAGTTACTTTAATATTAGCTGCAAATCGTCTTCATGGAACACTCCCCAAGGATTTTGGAGATAATCTCCCAAATCTCTTGTTCTTCAATTTCTGCTTCAACAGATTTTCGGGAACAATTCCAGAATCAATGCATAATATGACTCAAATACGAATTATTCGTTTTGCTCATAACCTTTTTGAAGGAACAATCCCCCCAGGTTTGGAAAATTTACCTCATCTTCAGATGTATTATATTGGACATAACAAGATCGTTAGTTCGGGTCCAAATGGGCTTAGTTTCATCTCCTCTTTAACCAACAGTTCTCGTCTTACTTTCATAGCTGTTGATGAAAACAAATTAGAAGGTGTGATTCCTGAATCCATTGGAAATCTTTCTAAAGTCTTTTCAAGATTGTACATGGGAGGGAATCGAATTTATGGGAATATACCATCTTCAATTGGTAATCTTCGTAGCTTAACTCTCTTGAATTTAAACAAAAACTTGCTAACTGGTGAAATCCCACCTCAAATTGGTCAGTTGGAGCAATTACAATTGTTGGGTTTAGCTAAAAATCGACTCTTTGGTAGAATTCCAAGCTCGTTGGGGAATCTTAGAAAATTAAACCACGTTGATTTGTCAGAGAACAACCTTACTGGGAACATCCCTATTTCTTTTGGGAACTTCACAAACTTGCTTGCAATGGATTTGTCGAACAATAAGCTAACTGGGGGAATACCTAAAGAGGCTCTAAATTATCCAAGTTTGAGTATGGTTTTGAATCTTTCTAGCAATATGCTAAGTGGGAATTTGCCACAAGAAATTGGATTACTTGAAAAAGTTGAGAAAATCGACATCTCTGAAAATCTCATTTCTGGCAATATTCCTTCTTCCATCGTTGGCTGCAAGAGTTTGGAGGTATTGACAATGGCCAAGAATGAATTTTCAGGTGAAATTCCAAGTACACTTGGAGAAATCATGGGGTTGCGAGCTTTAGATCTCTCCTCCAACAAACTTTCAGGTCCCATTCCTAATAATCTTCAAAACAGAGCAGCAATACAGCTCTTGAATCTCTCATTTAACAACCTAGAAGGAGTAGTTTCTGAAGGTGGAAGAGCTTATTTAGAAGGAAACCCTAATCTTTGCTTACCTTCTTTGTGTCAAAACAACAAATCCCACAACAAAAGGAGAATCAAAATCATATCTTTAACAGTCGTCTTCTCAACATTAGCACTCTGTTTCGCGTTGGGAACTTGGTTACATTTAGCTAAGAGAAAGTCAAAACTTTCACCATCGTCCTCAACTGATGAACTGATCAAAAGGCATCACGAAATGGTTTCATACGAAGAGATTCGAACCGGCACTGCCAATTTCAGTGAAGAAAATTTGTTGGGAAAGGGAAGTTTTGGGACAGTTTACAAAGGGTATTTAAACCTAAACGAAATAGATGGGGGAGTTTACGCAATCAAGGTGTTGAATATTGAACGAAGTGGGTATATTAAGAGCTTTTTGAGGGAGTGTGAGGCATTGAGAAACGTGAGGCATCGGAATTTAGTGAAACTTGTTACATCTTGTTCGAGTATAGACTATGAAGGGAGGGATTTTAGAGGTTTGGTTTGTGAGTTTTTGAGTAATGGAAGCTTGGAGGAGTGGATTCATGGGAAAAGAAAGCATTTGGATGGAAGTGGGTTGGACTTAGTGGAGAGATTGAATATTGGGATTGATGTTGGGTGTGTGTTGGAGTATCTTCATCATGGATGTCAAGTGCCGATTGCTCATTGTGATTTGAAGCCCAGCAATATTCTATTGGCGGAAGATATGAGTGCTAAGGTTGGAGACTTTGGGTTGGCCAAGTTGTTGATGGGAAATGAAGCAGATCAGTGTTCTTCCATCACTTCCTCTTATGTTCTTAAAGGTTCCATTGGCTACATTCCCCCAGAATACGGGATGGGAAGAACGCCGACGGTGGCCGGAGATGTATATAGTTTTGGGATAACTTTGTTGGAGCTTTTTACGGGAAAGAGTCCTACTGACGAAGGATTTAGTGAAAAACAAAATATAGTTAAATGGGTTCAATCCACTTATTTAAGGGATTTGATTGAATTTCAAACAGTTGGATCTCCCAGTAGTCAATTAAGTCAGTTAATTGGGTTCCATTGCTCCCACTACGAAGGTCGAGAAATCAGTGAACAAAACCAAATGGATTGCTTGATTCAAGTCATCGCCATCGCCATCTCTTGCGTTGCAAATTCTTCTAATAAACGCATCACCATTAAAGATGCTCTTTTGAGACTTCAAAACGCTAGAAATTCCCTCCATAGATTAAGTTAG 3084 38.72 MAISHPPLIHFICIFILAFEGSLFDSVRSSSSSSSSSSSSISNLESDKQSLISLKSGFNNLNLYDPLSTWDQNSSPCNWTGVSCNEDGERVVELDLSGLGLAGFLHMQIGNLSFLTSLQLQNNQLTGPIPIQIGNLFRLKVLNMSFNYIRGDLPFNISGMTQLEILDLTSNRITSQIPQEFSQLTKLKVLNLGQNHLYGTIPPSFGNLTSLVTLNLGTNSVSGFIPSELSRLQNLKNLMISINNFSGTVPSTIYNMSSLVTLILAANRLHGTLPKDFGDNLPNLLFFNFCFNRFSGTIPESMHNMTQIRIIRFAHNLFEGTIPPGLENLPHLQMYYIGHNKIVSSGPNGLSFISSLTNSSRLTFIAVDENKLEGVIPESIGNLSKVFSRLYMGGNRIYGNIPSSIGNLRSLTLLNLNKNLLTGEIPPQIGQLEQLQLLGLAKNRLFGRIPSSLGNLRKLNHVDLSENNLTGNIPISFGNFTNLLAMDLSNNKLTGGIPKEALNYPSLSMVLNLSSNMLSGNLPQEIGLLEKVEKIDISENLISGNIPSSIVGCKSLEVLTMAKNEFSGEIPSTLGEIMGLRALDLSSNKLSGPIPNNLQNRAAIQLLNLSFNNLEGVVSEGGRAYLEGNPNLCLPSLCQNNKSHNKRRIKIISLTVVFSTLALCFALGTWLHLAKRKSKLSPSSSTDELIKRHHEMVSYEEIRTGTANFSEENLLGKGSFGTVYKGYLNLNEIDGGVYAIKVLNIERSGYIKSFLRECEALRNVRHRNLVKLVTSCSSIDYEGRDFRGLVCEFLSNGSLEEWIHGKRKHLDGSGLDLVERLNIGIDVGCVLEYLHHGCQVPIAHCDLKPSNILLAEDMSAKVGDFGLAKLLMGNEADQCSSITSSYVLKGSIGYIPPEYGMGRTPTVAGDVYSFGITLLELFTGKSPTDEGFSEKQNIVKWVQSTYLRDLIEFQTVGSPSSQLSQLIGFHCSHYEGREISEQNQMDCLIQVIAIAISCVANSSNKRITIKDALLRLQNARNSLHRLS* 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18048006 18052185 + CsaV3_2G026350.1 Csa02g01915 519972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01915 1027 Gene3D Transferase(Phosphotransferase) domain 1 794 1025 - -
Csa02g01915 1027 ProSitePatterns Protein kinases ATP-binding region signature. 715 741 IPR017441 GO:0005524
Csa02g01915 1027 SMART serkin_6 709 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01915 1027 Pfam Leucine rich repeat 162 219 IPR001611 GO:0005515
Csa02g01915 1027 Gene3D Ribonuclease Inhibitor 196 255 IPR032675 -
Csa02g01915 1027 ProSitePatterns Serine/Threonine protein kinases active-site signature. 842 854 IPR008271 GO:0004672|GO:0006468
Csa02g01915 1027 SUPERFAMILY L domain-like 68 384 - -
Csa02g01915 1027 SMART LRR_typ_2 408 432 IPR003591 -
Csa02g01915 1027 SMART LRR_typ_2 160 183 IPR003591 -
Csa02g01915 1027 SMART LRR_typ_2 456 479 IPR003591 -
Csa02g01915 1027 SMART LRR_typ_2 208 232 IPR003591 -
Csa02g01915 1027 SMART LRR_typ_2 184 207 IPR003591 -
Csa02g01915 1027 SMART LRR_typ_2 256 280 IPR003591 -
Csa02g01915 1027 SMART LRR_typ_2 480 504 IPR003591 -
Csa02g01915 1027 SMART LRR_typ_2 112 136 IPR003591 -
Csa02g01915 1027 Pfam Leucine rich repeat N-terminal domain 45 85 IPR013210 -
Csa02g01915 1027 Gene3D Ribonuclease Inhibitor 352 644 IPR032675 -
Csa02g01915 1027 PANTHER OS04G0122200 PROTEIN 33 1022 - -
Csa02g01915 1027 Coils Coil 1009 1027 - -
Csa02g01915 1027 Pfam Leucine Rich Repeat 580 600 IPR001611 GO:0005515
Csa02g01915 1027 Pfam Protein kinase domain 710 1013 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01915 1027 SUPERFAMILY L domain-like 389 636 - -
Csa02g01915 1027 SUPERFAMILY Protein kinase-like (PK-like) 688 1016 IPR011009 -
Csa02g01915 1027 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 33 1022 - -
Csa02g01915 1027 Gene3D Phosphorylase Kinase; domain 1 671 793 - -
Csa02g01915 1027 ProSiteProfiles Protein kinase domain profile. 709 1027 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01915 1027 Gene3D Ribonuclease Inhibitor 42 195 IPR032675 -
Csa02g01915 1027 Gene3D Ribonuclease Inhibitor 256 351 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01915 - - - csv:101219969 1951.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01913 Csa-Chr2:18039973 Csa02g01915 Csa-Chr2:18048006 0 dispersed
Csa02g01915 Csa-Chr2:18048006 Csa06g00179 Csa-Chr6:1203015 0 dispersed
Csa05g02499 Csa-Chr5:26643635 Csa02g01915 Csa-Chr2:18048006 4.01E-17 dispersed
Csa02g01914 Csa-Chr2:18043941 Csa02g01915 Csa-Chr2:18048006 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g690 . . . . . . . . . . . . . . . . Cpe07g00506 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00578 . Car05g00136 . . . . . . . . . . . . . . . . . Lsi08g01506 Csa02g01915 Chy03g01570 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000052 15 13 4 11 4 8 7 7 11 17 9 10 8 7 14 8 11 4 7 11 14 16 4 8 4 14 8 18 7 5 284
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77912 PF00069 Pkinase 1.50E-36 CL0016 Csa PK