Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01916 ATGGCCGCCTCAGACAACTGTGCTCGTGTAACTCGTGCTTCCAAGAAGAGAGCTGCGGCGGCCGCCGTCGTCGAGGGTCAATCTGCAAATAAAAAGCGGGTGGTTCTTGGAGAGCTGTCCAATGTTCAGAATCTTAATGCCTCGGTGGTAGGACAGAAGAGGAAGGCCAAGTCCCAGATCACAAAATGTAAGCCTAAGAAGAGAGCGAAGGTTGGTGTTGCTCCGACCATCAAGACGACAGTTGTTTCTGAAGATAATGAACCTAAGTTGACTGTCGATGATCTTTTGGATGACCCAGAGATGAAGGGGCCTTATTCCTCTGATATTTATGCATATCTTCGCAAAATGGAGGCGGAACCAAAAAGAAGGCCGATTCCAAATTACATAGAGAAGATTCAGACGGATGTAAGTGCTAATATGAGAGGGGTCTTGGTTGATTGGATGGTTGAGGTAGCAGAAGAATACAAGCTTGGCCCCGATACTCTGTATTTATCCATCTCATATCTTGATAGGTTCCTCTCAATGAACATCCTCAGTAGGCAAAGACTTCAATTGTTGGGGGTTTCTTCAATGCTTATTGCATCGAAGTATGAAGAAATCACCCCTCCTCATGTGGAGGATTTCTGCTACATAACAGATAATACTTATAGAAGAGATGAGGTTGTGAAGATGGAGGCTGATATACTCAAGTCTTTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTGAGGAGGTTCACTAATGTTGCTCAAGAGGATTTCAAAATACCAAATCTACAGTTGGAATTTCTGGGTTATTACCTTGCTGAGCTGAGCTTGTTGGACTATAATTTCGTTAAGTTCTTGCCTTCTATGGTTGCTGCTTCAGTTGTGTTTCTTGCTAAATTTATTATCCGACCGAAGCTGCATCCTTGGGGTCCAGGCATACAACAATACACAGGCTACAAGCCAGCTGATCTAAGGCCATGTGTTATTCTGTTACATGATTTGTACATGGCCAGAAGAGGAGGGTCTTTGATAGCTGTGAGAGAAAAATACAAGCTACATAGGAAGCAATCAGGAAAGGATGTACGGAAGTGA 1086 43.55 MAASDNCARVTRASKKRAAAAAVVEGQSANKKRVVLGELSNVQNLNASVVGQKRKAKSQITKCKPKKRAKVGVAPTIKTTVVSEDNEPKLTVDDLLDDPEMKGPYSSDIYAYLRKMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGPDTLYLSISYLDRFLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRRFTNVAQEDFKIPNLQLEFLGYYLAELSLLDYNFVKFLPSMVAASVVFLAKFIIRPKLHPWGPGIQQYTGYKPADLRPCVILLHDLYMARRGGSLIAVREKYKLHRKQSGKDVRK* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18053116 18056491 + CsaV3_2G026360.1 Csa02g01916 519973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01916 361 CDD CYCLIN 239 330 IPR013763 -
Csa02g01916 361 SUPERFAMILY Cyclin-like 239 352 IPR036915 -
Csa02g01916 361 Gene3D - 124 237 - -
Csa02g01916 361 PANTHER CYCLIN-A3-1-RELATED 24 352 - -
Csa02g01916 361 PANTHER CYCLINS 24 352 IPR039361 -
Csa02g01916 361 SUPERFAMILY Cyclin-like 97 236 IPR036915 -
Csa02g01916 361 Gene3D - 108 352 - -
Csa02g01916 361 SMART Cyclin_C_2 239 361 IPR004367 -
Csa02g01916 361 ProSitePatterns Cyclins signature. 141 172 IPR006671 -
Csa02g01916 361 CDD CYCLIN 140 229 IPR013763 -
Csa02g01916 361 Pfam Cyclin, C-terminal domain 239 352 IPR004367 -
Csa02g01916 361 PIRSF Cyclin_A_B_D_E 1 357 IPR039361 -
Csa02g01916 361 Pfam Cyclin, N-terminal domain 108 236 IPR006671 -
Csa02g01916 361 SMART cyclin_7 243 331 IPR013763 -
Csa02g01916 361 SMART cyclin_7 146 230 IPR013763 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01916 Csa04g02456 CCT
Csa02g01916 Csa04g02456 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01916 Csa-Chr2:18053116 Csa06g02128 Csa-Chr6:19014362 2.12E-99 dispersed
Csa02g01916 Csa-Chr2:18053116 Csa04g02456 Csa-Chr4:24614388 1.71E-148 wgd
Csa02g01916 Csa-Chr2:18053116 Csa07g00705 Csa-Chr7:5032351 1.31E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01916 K06627 - csv:101206145 673.7