Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01923 ATGGTTTTGTTGAGATTGTCAATCATATTATGTGTGATGTTATATGGTCCTTCTCTTTCAGGAGCTGCTTCTCCTAAGAACATATTCATCCTCGCAGGTCAGAGTAACATGGCTGGTCGAGGTGGAGTTGAGAACAATGCTCAAGGAAATCTCCAGTGGGATGGGTTAGTCCCACCAGAATGTCAACCTCAACCATCCATCCTACGATTGAACCCTGGTCTCCAATGGGAGATAGCACGAGAGCCACTCCATTTGGGAATTGACATCAAAAGGACCCCTGGAATTGGTCCCGGTATCGCATTTGCTCATGAATTGCTAGTCAAAGCTGGACCAAATGCTGGCGCTGTGGGTTTAGTTCCATGTGCTAGAGGTGGCACTTTAATTGAACAATGGATTAAAAATCCTAGCAATCCTAGTGCAACCTTTTACCAAAACTTCATTGAACGAATCAAAGCATCGGATAAAGATGGTGGGGTTGTGCGTGCTCTTTTCTGGTTCCAAGGAGAAAGTGATGCAGCTATGAATGACACTGCCATTAGATACAAAGACAACCTAAAGAAATTCTTCACTGACATTCGTGATGACATAAAACCTAGATTTTTGCCCATCATTGTTGTTAAAATAGCTCTCTACGACTTTTTTAGGCAGCACGATACTCATAACCTCCCAGCAGTGAGGGAAGCACAAGAAGCAGTCAGCAAGGAGCTGCCTAACGTGGTGGCCATCGATTCGTTGAAATTACCTATAAACTATACAACAAATGAAGGCATCAACCTAGATCATGGTCATTTTAACACCACAACCGAAATTACTTTGGGTAAATGGTTGGCTGAAACCTACCTCTCCCACTTTGGAGCTGCTTCTCCTAAGAACATATTCATCCTCGCAGGTCAGAGTAACATGGCTGGTCGAGGTGGAGTTGAGAACAATGCTCAAGGAAATCTCCAGTGGGATGGGTTAGTCCCACCAGAATGTCAACCTCAACCATCCATCCTACGATTGAACCCTGGTCTCCAATGGGAGATAGCACGAGAGCCACTCCATTTGGGAATTGACATCAAAAGGACCCCTGGAATTGGTCCCGGTATCGCATTTGCTCATGAATTGCTAGTCAAAGTTGGACCAAATGCTGGCGCTGTGGGTTTAGTTCCATGTGCTAGAGCATCGGATAAAGATGGTGGGGTTGTGCGTGCTCTTTTCTGGTTCCAAGGAGAAAGTGATGCAGCTATGAATGACACCGCCATTAGATACAAAGACAACCTAAAGAAATTCTTCACTGACATTCGTGATGACATAAAACCTAGATTTTTGCCCATCATTGTTGTTAAAATAGCTCTCTACGACTTTTTTAGGCAGCACGATACTCATAACCTCCCAGCAGTGAGGGAAGCACAAGAAGCAGTCAGCAAGGAGCTGCCTGACGTAGTGGCCATCGATTCGTTGAAATTACCTATAAACTATACAACAAATGAAGGCATCAACCTAGATCATGGTCATTTTAACACCACAACCGAAATTACTTTGGGAGCTGCTTCTCCTAAGAACATATTCATCCTCGCAGGTCAAAGTAACATGGCTGGTCGAGGTGGAGTTGAGAACAATGCTCAAGGAAATCTCCAGTGGGATGGGTTAGTCCCACCAGAATGTCAACCTCAACCATCCATCCTACGATTGAACCCTGGTCTCCAATGGGAGATAGCACGAGAGCCACTCCATTTGGGAATTGACATCAATAGGACCCCTGGAATTGGTCCCGGTATCGCATTTGCTCATGAATTGCTAGTCAAAGCTGGACCAAATGCTGGCGCTGTGGGTTTAGTTCCATGTGCTAGAGGTGGCACTTTAATTGAACAATGGATTAAAAATCCTAGCAATCCTAGTGCAACCTTTTACCAAAACTTCATTGAACGAATCAAAGCATCAGATAAAGATGGTGGGGTTGTGCGTGCTCTTTTCTGGTTCCAAGGAGAAAGTGATGCAGCTATGAATGACACTGCCATTAGATACAAAGACAACCTAAAGAAATTCTTCACTGACATTCGCGATGACATAAAACCTAGATTTTTGCCCATCATTGTTGTTAAAATAGCTCTCTACGACTTTTTTAGGCAGCACGATACTCATAACCTCCCAGCAGTGAGGGAAGCACAAGAAGCAGTCAGCAAGGAGCTGCCTGACGTAGTGGCCATCGATTCGTTGAAATTACCTATAAACTATACAACAAATGAAGGCATCAACCTAGATCATGGTCATTTTAACACCACAACCGAAATTACTTTGGGTAAATGGTTGGCTGAAACCTACCTCTCCCACTTTGGTCAGAGTAACATGGCTGGTCGAGGTGGAGTTGAGAACAATGCTCAAGGAAATCTCCAATGGGATGGGTTAGTCCCACCAGAATGTCAACCTCAACCATCCATCCTACGATTGAACCCTGGTCTCCAATGGGAGATAGCACGAGAGAGCCACTCCATTTGGGAATTGACATCAAAAGGACCCCTGGAATTGGTCCCGGTATCGCATTTGCTCATGAATTGCTAG 2541 44.59 MVLLRLSIILCVMLYGPSLSGAASPKNIFILAGQSNMAGRGGVENNAQGNLQWDGLVPPECQPQPSILRLNPGLQWEIAREPLHLGIDIKRTPGIGPGIAFAHELLVKAGPNAGAVGLVPCARGGTLIEQWIKNPSNPSATFYQNFIERIKASDKDGGVVRALFWFQGESDAAMNDTAIRYKDNLKKFFTDIRDDIKPRFLPIIVVKIALYDFFRQHDTHNLPAVREAQEAVSKELPNVVAIDSLKLPINYTTNEGINLDHGHFNTTTEITLGKWLAETYLSHFGAASPKNIFILAGQSNMAGRGGVENNAQGNLQWDGLVPPECQPQPSILRLNPGLQWEIAREPLHLGIDIKRTPGIGPGIAFAHELLVKVGPNAGAVGLVPCARASDKDGGVVRALFWFQGESDAAMNDTAIRYKDNLKKFFTDIRDDIKPRFLPIIVVKIALYDFFRQHDTHNLPAVREAQEAVSKELPDVVAIDSLKLPINYTTNEGINLDHGHFNTTTEITLGAASPKNIFILAGQSNMAGRGGVENNAQGNLQWDGLVPPECQPQPSILRLNPGLQWEIAREPLHLGIDINRTPGIGPGIAFAHELLVKAGPNAGAVGLVPCARGGTLIEQWIKNPSNPSATFYQNFIERIKASDKDGGVVRALFWFQGESDAAMNDTAIRYKDNLKKFFTDIRDDIKPRFLPIIVVKIALYDFFRQHDTHNLPAVREAQEAVSKELPDVVAIDSLKLPINYTTNEGINLDHGHFNTTTEITLGKWLAETYLSHFGQSNMAGRGGVENNAQGNLQWDGLVPPECQPQPSILRLNPGLQWEIARESHSIWELTSKGPLELVPVSHLLMNC* 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18072551 18084246 + CsaV3_2G026430.1 Csa02g01923 519980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01923 846 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 290 388 IPR005181 -
Csa02g01923 846 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 26 281 IPR005181 -
Csa02g01923 846 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 391 510 IPR005181 -
Csa02g01923 846 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 514 769 IPR005181 -
Csa02g01923 846 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 773 822 IPR005181 -
Csa02g01923 846 SUPERFAMILY SGNH hydrolase 27 285 - -
Csa02g01923 846 SUPERFAMILY SGNH hydrolase 515 771 - -
Csa02g01923 846 SUPERFAMILY SGNH hydrolase 291 510 - -
Csa02g01923 846 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 287 388 - -
Csa02g01923 846 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 386 510 - -
Csa02g01923 846 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 512 772 - -
Csa02g01923 846 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 23 284 - -
Csa02g01923 846 PANTHER BNACNNG62850D PROTEIN 386 510 - -
Csa02g01923 846 PANTHER BNACNNG62850D PROTEIN 512 772 - -
Csa02g01923 846 PANTHER BNACNNG62850D PROTEIN 773 822 - -
Csa02g01923 846 PANTHER BNACNNG62850D PROTEIN 287 388 - -
Csa02g01923 846 PANTHER BNACNNG62850D PROTEIN 23 284 - -
Csa02g01923 846 Gene3D SGNH hydrolase 514 771 IPR036514 -
Csa02g01923 846 Gene3D SGNH hydrolase 24 285 IPR036514 -
Csa02g01923 846 Gene3D SGNH hydrolase 389 513 IPR036514 -
Csa02g01923 846 Gene3D SGNH hydrolase 288 388 IPR036514 -
Csa02g01923 846 Gene3D SGNH hydrolase 772 833 IPR036514 -
Csa02g01923 846 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 773 822 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01923 - - - csv:116402003 579.326
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01923 Csa04g02447 CCT
Csa02g01923 Csa04g02447 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01923 Csa-Chr2:18072551 Csa06g01140 Csa-Chr6:9494465 4.95E-21 dispersed
Csa02g01922 Csa-Chr2:18069067 Csa02g01923 Csa-Chr2:18072551 3.82E-24 tandem
Csa02g01923 Csa-Chr2:18072551 Csa02g01924 Csa-Chr2:18087096 2.48E-16 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g715 . Blo12g00972 . Bda03g00197 . Bpe04g00169 Bma04g00150 . . Cmo12g00515 . . . . . . Cpe07g00500 Bhi04g00386 . . . Hepe03g0729 . Lcy13g2109 Cla08g01593 Cam08g2093 Cec08g1674 Cco08g1805 Clacu08g1778 . Cre08g1561 . . . Cone20ag0211 . Csa04g02447 . Cme03g02074 . . . . . Bpe05g00378 . . . . . Cma12g00572 . . . . . . . . . . . . . . . . . . . Lsi08g01499 Csa02g01923 Chy07g00162 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000128 0 5 0 0 0 8 1 8 7 3 6 7 11 6 8 12 7 1 11 7 5 24 17 10 14 13 7 4 12 0 214