Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01926 ATGGTACCACCGTATGCCCTTGATGCTCTTTATTGCTCAGAGGAGCACTGGGAGGACGACGACGACGACGACGAAGAACAAGAAACGGCTTTTCGTTTTGATAACCAATCTTACTCTAATTTAACAACAGAAACAAGTTCTCCGATTCTGGCTGTGGTGGCACACCATGACCTGTTATGGGAAAAAGATGAACTAATTTCTCTGTTTTCAAGAGAGAAGCCTAATGAACTTTTTAAAACCATTCAGATTGACCCTTCTCTTGCTGCTGCCCGACGAACCGCTGTTGAGTGGATGCTGAAGGTTAATGCCCATTACTCCTTCTCTGCCCTCACTGCGGTTCTCGCCGTTGATTACTTAGATCGGTTTCTGTCCTGTTTTCATTTCCAAAGAGATAAGCCATGGATGTCTCAACTTGCAGCTGTTGCTTGTATCTCTCTTGCTGCCAAAGTGGAGGAGACTCAAGTCCCTCTTTTATTGGACCTACAAGTGGAAGATAGTAGATATCTGTTTGAAGCCAAGACCATTAAGAAAATGGAGCTTCTTGTGCTCTCTACGCTGCAGTGGCGGATGAATCCTGTTACCCCGTTTTCTTTTGTGGATTATATCACAAGAAGGCTTGGATTCAAGGACCATATGTGCTGGGAAATTCTTTGGCAGTGTGAACGAACTATTCTCTCTGTTATTTTAGAGTCAGATTTCATGTCCTTTCTTCCCTCTGCAATGGCCACCGCTACAATGCTGCACGTTTTCAAAGCTATGGAAGAACCCCATTGCAGCGTTGATTACCATTCCCAGCTTCTGAACATCCTCGGAATCGACAAGGGAAATGTGGAAGAATGCTGTAAACTGATCTCAAATGCATCTAGAAGGAACGGAAACCAGTTCAACAAACGTAAATTCGGGTTGTCAATTCCAGGGAGCCCGAACGGCGTGATGGACGTAGCATTCAGCTCCGATAGCTCGAACGACTCGTGGTCAGTGGCTTCGTCGGTTTCATCTTCGCCAGAGCCATTAACGAAGAAGAACAGAGTAAATGGATCAGTGACTGGAGATTGTGAAACATTCCGAACGCTCTCTTAA 1080 45.19 MVPPYALDALYCSEEHWEDDDDDDEEQETAFRFDNQSYSNLTTETSSPILAVVAHHDLLWEKDELISLFSREKPNELFKTIQIDPSLAAARRTAVEWMLKVNAHYSFSALTAVLAVDYLDRFLSCFHFQRDKPWMSQLAAVACISLAAKVEETQVPLLLDLQVEDSRYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDYITRRLGFKDHMCWEILWQCERTILSVILESDFMSFLPSAMATATMLHVFKAMEEPHCSVDYHSQLLNILGIDKGNVEECCKLISNASRRNGNQFNKRKFGLSIPGSPNGVMDVAFSSDSSNDSWSVASSVSSSPEPLTKKNRVNGSVTGDCETFRTLS* 360
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 18094023 18096289 - CsaV3_2G026460.1 Csa02g01926 519983
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01926 359 PANTHER CYCLIN D3.1 PROTEIN 36 343 - -
Csa02g01926 359 MobiDBLite consensus disorder prediction 327 346 - -
Csa02g01926 359 Gene3D - 76 191 - -
Csa02g01926 359 SMART cyclin_7 96 184 IPR013763 -
Csa02g01926 359 Pfam Cyclin, C-terminal domain 193 295 IPR004367 -
Csa02g01926 359 SUPERFAMILY Cyclin-like 175 287 IPR036915 -
Csa02g01926 359 Gene3D - 192 282 - -
Csa02g01926 359 SMART Cyclin_C_2 193 320 IPR004367 -
Csa02g01926 359 Pfam Cyclin, N-terminal domain 86 191 IPR006671 -
Csa02g01926 359 PANTHER CYCLINS 36 343 IPR039361 -
Csa02g01926 359 CDD CYCLIN 91 183 IPR013763 -
Csa02g01926 359 SUPERFAMILY Cyclin-like 66 191 IPR036915 -
Csa02g01926 359 ProSitePatterns Cyclins signature. 91 122 IPR006671 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Csa02g01926 Csa04g02445 CCT
Csa02g01926 Csa04g02445 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01926 Csa-Chr2:18094023 Csa03g01827 Csa-Chr3:14012615 5.64E-100 dispersed
Csa02g01926 Csa-Chr2:18094023 Csa04g02445 Csa-Chr4:24557946 3.85E-107 wgd
Csa02g01926 Csa-Chr2:18094023 Csa06g02966 Csa-Chr6:25660299 1.06E-88 wgd
Csa02g01926 Csa-Chr2:18094023 Csa07g00732 Csa-Chr7:5194238 1.19E-87 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01926 K14505 - csv:101205442 671.003