Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa02g01926 | ATGGTACCACCGTATGCCCTTGATGCTCTTTATTGCTCAGAGGAGCACTGGGAGGACGACGACGACGACGACGAAGAACAAGAAACGGCTTTTCGTTTTGATAACCAATCTTACTCTAATTTAACAACAGAAACAAGTTCTCCGATTCTGGCTGTGGTGGCACACCATGACCTGTTATGGGAAAAAGATGAACTAATTTCTCTGTTTTCAAGAGAGAAGCCTAATGAACTTTTTAAAACCATTCAGATTGACCCTTCTCTTGCTGCTGCCCGACGAACCGCTGTTGAGTGGATGCTGAAGGTTAATGCCCATTACTCCTTCTCTGCCCTCACTGCGGTTCTCGCCGTTGATTACTTAGATCGGTTTCTGTCCTGTTTTCATTTCCAAAGAGATAAGCCATGGATGTCTCAACTTGCAGCTGTTGCTTGTATCTCTCTTGCTGCCAAAGTGGAGGAGACTCAAGTCCCTCTTTTATTGGACCTACAAGTGGAAGATAGTAGATATCTGTTTGAAGCCAAGACCATTAAGAAAATGGAGCTTCTTGTGCTCTCTACGCTGCAGTGGCGGATGAATCCTGTTACCCCGTTTTCTTTTGTGGATTATATCACAAGAAGGCTTGGATTCAAGGACCATATGTGCTGGGAAATTCTTTGGCAGTGTGAACGAACTATTCTCTCTGTTATTTTAGAGTCAGATTTCATGTCCTTTCTTCCCTCTGCAATGGCCACCGCTACAATGCTGCACGTTTTCAAAGCTATGGAAGAACCCCATTGCAGCGTTGATTACCATTCCCAGCTTCTGAACATCCTCGGAATCGACAAGGGAAATGTGGAAGAATGCTGTAAACTGATCTCAAATGCATCTAGAAGGAACGGAAACCAGTTCAACAAACGTAAATTCGGGTTGTCAATTCCAGGGAGCCCGAACGGCGTGATGGACGTAGCATTCAGCTCCGATAGCTCGAACGACTCGTGGTCAGTGGCTTCGTCGGTTTCATCTTCGCCAGAGCCATTAACGAAGAAGAACAGAGTAAATGGATCAGTGACTGGAGATTGTGAAACATTCCGAACGCTCTCTTAA | 1080 | 45.19 | MVPPYALDALYCSEEHWEDDDDDDEEQETAFRFDNQSYSNLTTETSSPILAVVAHHDLLWEKDELISLFSREKPNELFKTIQIDPSLAAARRTAVEWMLKVNAHYSFSALTAVLAVDYLDRFLSCFHFQRDKPWMSQLAAVACISLAAKVEETQVPLLLDLQVEDSRYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDYITRRLGFKDHMCWEILWQCERTILSVILESDFMSFLPSAMATATMLHVFKAMEEPHCSVDYHSQLLNILGIDKGNVEECCKLISNASRRNGNQFNKRKFGLSIPGSPNGVMDVAFSSDSSNDSWSVASSVSSSPEPLTKKNRVNGSVTGDCETFRTLS* | 360 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 18094023 | 18096289 | - | CsaV3_2G026460.1 | Csa02g01926 | 519983 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa02g01926 | 359 | PANTHER | CYCLIN D3.1 PROTEIN | 36 | 343 | - | - | |
| Csa02g01926 | 359 | MobiDBLite | consensus disorder prediction | 327 | 346 | - | - | |
| Csa02g01926 | 359 | Gene3D | - | 76 | 191 | - | - | |
| Csa02g01926 | 359 | SMART | cyclin_7 | 96 | 184 | IPR013763 | - | |
| Csa02g01926 | 359 | Pfam | Cyclin, C-terminal domain | 193 | 295 | IPR004367 | - | |
| Csa02g01926 | 359 | SUPERFAMILY | Cyclin-like | 175 | 287 | IPR036915 | - | |
| Csa02g01926 | 359 | Gene3D | - | 192 | 282 | - | - | |
| Csa02g01926 | 359 | SMART | Cyclin_C_2 | 193 | 320 | IPR004367 | - | |
| Csa02g01926 | 359 | Pfam | Cyclin, N-terminal domain | 86 | 191 | IPR006671 | - | |
| Csa02g01926 | 359 | PANTHER | CYCLINS | 36 | 343 | IPR039361 | - | |
| Csa02g01926 | 359 | CDD | CYCLIN | 91 | 183 | IPR013763 | - | |
| Csa02g01926 | 359 | SUPERFAMILY | Cyclin-like | 66 | 191 | IPR036915 | - | |
| Csa02g01926 | 359 | ProSitePatterns | Cyclins signature. | 91 | 122 | IPR006671 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Csa02g01926 | Csa04g02445 | CCT | |
| Csa02g01926 | Csa04g02445 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa02g01926 | Csa-Chr2:18094023 | Csa03g01827 | Csa-Chr3:14012615 | 5.64E-100 | dispersed | |
| Csa02g01926 | Csa-Chr2:18094023 | Csa04g02445 | Csa-Chr4:24557946 | 3.85E-107 | wgd | |
| Csa02g01926 | Csa-Chr2:18094023 | Csa06g02966 | Csa-Chr6:25660299 | 1.06E-88 | wgd | |
| Csa02g01926 | Csa-Chr2:18094023 | Csa07g00732 | Csa-Chr7:5194238 | 1.19E-87 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa02g01926 | K14505 | - | csv:101205442 | 671.003 |