Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g01931 | ATGGTATTAAACATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCTCTCTCCCTTGGCTGTAAACGCTTACGCCCTCTTGCTCCTAAACTTCAACAACCCACCTCCGATAACACAACCACCACCACCACCACCCTCACCACTTTCGATCTCAAGACCTTCATCAAACCCGATTGTGGTCCTCGCAAACCAGGTTCCTCCCATGATCACAGCAAAGACTCTTCCTCCTCTTCCTCTTCCCTCCAGACAGGGGTGGAAACGCATCCTGGAGGGACACGGTGGAATCCAACTCAAGAACAAATTGGGATATTGGAGATGCTTTATAGCAGAGGAATGAGGACTCCCAATGCCCAACAAATCGAACACATCACTGCACAACTTGGCAACTACGGAAAGATTGAAGGCAAGAATGTTTTTTATTGGTTTCAAAATCATAAAGCCCGTGAACGACAGAAACAGAAACGCAACAGTCTTGGTCTTCCACACTCTCCAAGAACTCCTCCCCCTCCTCCCATCATTCCCGCCTTCCACACGGGAGAGGAAGACAGCCCGTACAAGAGGAAGTGCTTGTATTGGGGTTTTGAGTGTTTGGTAGAAGATAATGGTTTAATGTGTAAAAAGGAGGAAGATCATGATAGGACTTTGGAGTTATTCCCCTTGCACCCAGAACGCTGA | 684 | 47.66 | MVLNMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQPTSDNTTTTTTTLTTFDLKTFIKPDCGPRKPGSSHDHSKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPAFHTGEEDSPYKRKCLYWGFECLVEDNGLMCKKEEDHDRTLELFPLHPER* | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 18135487 | 18137647 | + | CsaV3_2G026510.1 | Csa02g01931 | 519988 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g01931 | 227 | SUPERFAMILY | Homeodomain-like | 91 | 161 | IPR009057 | - | |
Csa02g01931 | 227 | MobiDBLite | consensus disorder prediction | 74 | 101 | - | - | |
Csa02g01931 | 227 | CDD | homeodomain | 95 | 156 | IPR001356 | GO:0003677 | |
Csa02g01931 | 227 | Gene3D | - | 94 | 161 | - | - | |
Csa02g01931 | 227 | Pfam | Homeodomain | 95 | 154 | IPR001356 | GO:0003677 | |
Csa02g01931 | 227 | SMART | HOX_1 | 92 | 159 | IPR001356 | GO:0003677 | |
Csa02g01931 | 227 | MobiDBLite | consensus disorder prediction | 59 | 101 | - | - | |
Csa02g01931 | 227 | MobiDBLite | consensus disorder prediction | 152 | 182 | - | - | |
Csa02g01931 | 227 | ProSiteProfiles | 'Homeobox' domain profile. | 90 | 155 | IPR001356 | GO:0003677 | |
Csa02g01931 | 227 | PANTHER | WUSCHEL-RELATED HOMEOBOX 4 | 5 | 226 | IPR044186 | GO:0003700|GO:0010067|GO:0010087|GO:0051301 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00712 | Csa-Chr1:4514227 | Csa02g01931 | Csa-Chr2:18135487 | 2.44E-27 | dispersed | |
Csa01g02397 | Csa-Chr1:21264100 | Csa02g01931 | Csa-Chr2:18135487 | 2.42E-27 | dispersed | |
Csa02g01931 | Csa-Chr2:18135487 | Csa06g01701 | Csa-Chr6:14959644 | 1.12E-25 | dispersed | |
Csa02g01931 | Csa-Chr2:18135487 | Csa01g00431 | Csa-Chr1:2700556 | 1.23E-28 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30985 | PF00046 | Homeodomain | 9.70E-19 | CL0123 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g01931 | - | - | csv:101204222 | 425.246 |