Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01931 ATGGTATTAAACATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCTCTCTCCCTTGGCTGTAAACGCTTACGCCCTCTTGCTCCTAAACTTCAACAACCCACCTCCGATAACACAACCACCACCACCACCACCCTCACCACTTTCGATCTCAAGACCTTCATCAAACCCGATTGTGGTCCTCGCAAACCAGGTTCCTCCCATGATCACAGCAAAGACTCTTCCTCCTCTTCCTCTTCCCTCCAGACAGGGGTGGAAACGCATCCTGGAGGGACACGGTGGAATCCAACTCAAGAACAAATTGGGATATTGGAGATGCTTTATAGCAGAGGAATGAGGACTCCCAATGCCCAACAAATCGAACACATCACTGCACAACTTGGCAACTACGGAAAGATTGAAGGCAAGAATGTTTTTTATTGGTTTCAAAATCATAAAGCCCGTGAACGACAGAAACAGAAACGCAACAGTCTTGGTCTTCCACACTCTCCAAGAACTCCTCCCCCTCCTCCCATCATTCCCGCCTTCCACACGGGAGAGGAAGACAGCCCGTACAAGAGGAAGTGCTTGTATTGGGGTTTTGAGTGTTTGGTAGAAGATAATGGTTTAATGTGTAAAAAGGAGGAAGATCATGATAGGACTTTGGAGTTATTCCCCTTGCACCCAGAACGCTGA 684 47.66 MVLNMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQPTSDNTTTTTTTLTTFDLKTFIKPDCGPRKPGSSHDHSKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPAFHTGEEDSPYKRKCLYWGFECLVEDNGLMCKKEEDHDRTLELFPLHPER* 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18135487 18137647 + CsaV3_2G026510.1 Csa02g01931 519988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01931 227 SUPERFAMILY Homeodomain-like 91 161 IPR009057 -
Csa02g01931 227 MobiDBLite consensus disorder prediction 74 101 - -
Csa02g01931 227 CDD homeodomain 95 156 IPR001356 GO:0003677
Csa02g01931 227 Gene3D - 94 161 - -
Csa02g01931 227 Pfam Homeodomain 95 154 IPR001356 GO:0003677
Csa02g01931 227 SMART HOX_1 92 159 IPR001356 GO:0003677
Csa02g01931 227 MobiDBLite consensus disorder prediction 59 101 - -
Csa02g01931 227 MobiDBLite consensus disorder prediction 152 182 - -
Csa02g01931 227 ProSiteProfiles 'Homeobox' domain profile. 90 155 IPR001356 GO:0003677
Csa02g01931 227 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 226 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00712 Csa-Chr1:4514227 Csa02g01931 Csa-Chr2:18135487 2.44E-27 dispersed
Csa01g02397 Csa-Chr1:21264100 Csa02g01931 Csa-Chr2:18135487 2.42E-27 dispersed
Csa02g01931 Csa-Chr2:18135487 Csa06g01701 Csa-Chr6:14959644 1.12E-25 dispersed
Csa02g01931 Csa-Chr2:18135487 Csa01g00431 Csa-Chr1:2700556 1.23E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30985 PF00046 Homeodomain 9.70E-19 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01931 - - csv:101204222 425.246