Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01931 ATGGTATTAAACATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCTCTCTCCCTTGGCTGTAAACGCTTACGCCCTCTTGCTCCTAAACTTCAACAACCCACCTCCGATAACACAACCACCACCACCACCACCCTCACCACTTTCGATCTCAAGACCTTCATCAAACCCGATTGTGGTCCTCGCAAACCAGGTTCCTCCCATGATCACAGCAAAGACTCTTCCTCCTCTTCCTCTTCCCTCCAGACAGGGGTGGAAACGCATCCTGGAGGGACACGGTGGAATCCAACTCAAGAACAAATTGGGATATTGGAGATGCTTTATAGCAGAGGAATGAGGACTCCCAATGCCCAACAAATCGAACACATCACTGCACAACTTGGCAACTACGGAAAGATTGAAGGCAAGAATGTTTTTTATTGGTTTCAAAATCATAAAGCCCGTGAACGACAGAAACAGAAACGCAACAGTCTTGGTCTTCCACACTCTCCAAGAACTCCTCCCCCTCCTCCCATCATTCCCGCCTTCCACACGGGAGAGGAAGACAGCCCGTACAAGAGGAAGTGCTTGTATTGGGGTTTTGAGTGTTTGGTAGAAGATAATGGTTTAATGTGTAAAAAGGAGGAAGATCATGATAGGACTTTGGAGTTATTCCCCTTGCACCCAGAACGCTGA 684 47.66 MVLNMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQPTSDNTTTTTTTLTTFDLKTFIKPDCGPRKPGSSHDHSKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPAFHTGEEDSPYKRKCLYWGFECLVEDNGLMCKKEEDHDRTLELFPLHPER* 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18135487 18137647 + CsaV3_2G026510.1 Csa02g01931 519988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01931 227 SUPERFAMILY Homeodomain-like 91 161 IPR009057 -
Csa02g01931 227 MobiDBLite consensus disorder prediction 74 101 - -
Csa02g01931 227 CDD homeodomain 95 156 IPR001356 GO:0003677
Csa02g01931 227 Gene3D - 94 161 - -
Csa02g01931 227 Pfam Homeodomain 95 154 IPR001356 GO:0003677
Csa02g01931 227 SMART HOX_1 92 159 IPR001356 GO:0003677
Csa02g01931 227 MobiDBLite consensus disorder prediction 59 101 - -
Csa02g01931 227 MobiDBLite consensus disorder prediction 152 182 - -
Csa02g01931 227 ProSiteProfiles 'Homeobox' domain profile. 90 155 IPR001356 GO:0003677
Csa02g01931 227 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 226 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01931 - - - csv:101204222 425.246
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00712 Csa-Chr1:4514227 Csa02g01931 Csa-Chr2:18135487 2.44E-27 dispersed
Csa01g02397 Csa-Chr1:21264100 Csa02g01931 Csa-Chr2:18135487 2.42E-27 dispersed
Csa02g01931 Csa-Chr2:18135487 Csa06g01701 Csa-Chr6:14959644 1.12E-25 dispersed
Csa02g01931 Csa-Chr2:18135487 Csa01g00431 Csa-Chr1:2700556 1.23E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g735 . . . . . . . . Cmo05g00169 Cmo12g00505 . . . Car12g00518 Sed11g0934 . Cpe07g00494 Bhi04g00375 Tan02g1791 Cmetu12g0458 . Hepe08g1298 . Lcy13g2095 Cla08g01585 Cam08g2084 Cec08g1665 Cco08g1796 Clacu08g1770 . Cre08g1554 . . Cone17ag0854 Cone20ag0200 . . . Cme03g02065 . . . . . Bpe05g00030 Bma01g00657 Bma05g00042 . . . Cma12g00562 Cma05g00171 Car05g00145 . Cpe11g00141 . . . . . . . . . . . . . . . Lsi08g01489 Csa02g01931 Chy03g01558 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g00712 CCT,ECH 1 194 Wox Gene Family AT3G18010 55.8 8.8e-50 194.5
Csa03g03626 . 4 253 Wox Gene Family AT3G03660 52.9 5.5e-53 204.9
Csa03g03626 . 19 258 Wox Gene Family AT5G17810 50.2 2.2e-53 206.1
Csa02g01931 . 5 161 Wox Gene Family AT1G46480 65.1 1.3e-50 196.4
Csa01g00712 CCT,ECH 1 194 Wox Gene Family AT3G18010 55.8 8.8e-50 194.5
Csa02g01931 . 5 161 Wox Gene Family AT1G46480 65.1 1.3e-50 196.4
Csa03g03626 . 4 253 Wox Gene Family AT3G03660 52.9 5.5e-53 204.9
Csa03g03626 . 19 258 Wox Gene Family AT5G17810 50.2 2.2e-53 206.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30985 PF00046 Homeodomain 9.70E-19 CL0123 Csa TF