Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01934 ATGGCGGATCTCTACGGAACTTCCCCTTCTTCCGATGTTGTGGGTTTGCCCCATGACCCTGAAGATTTCTCTTCTTTCATCAATCACCACCTTCAAACCACTACTTCTTCTGCTTCTTCCCCTTCTTGCGTTTCCTTCAAGAACAAGTTCATGCCCTTGTTGCATTCTCAACCTCCTTGGCACTCTTCGCCGATGTTTTCTCGCCGGCCCGATTCCACCTCTGTTCCCGGTATGTCCTGCATGCTCGATTTTCCCGAGGATCGGCTTCAGTCCAGTCGTGTTTTGAACCACGCTTTGTCGGATTGTAATGTTAGGGATGTGAGATTTGCTGATGCTTCGTATTTGGCTGTGAACTCAACTTGCGGCGGCGTGAAATTGTCGGATCCTGGTGACTTTCTCAAAGAAAGTTCCGACAACGCCTTTTCTTCCTCCGGCGCTGTTGATTCCGATACGAATGCACCGTTGAAGAGAAGGGGTCTTTCGTCTGAAAATGATCTTGGGGATTTCAGTTGCGATAGCGAGGGTGGGGATTTGCCTGAAGTTCCATCTAGTACTAATCTGCCTCGAAATTCATCGAAGAGAAGTAGAAGCGCTGAGGTCCATAATATGTCGGAGAAGAGACGAAGAAGGAGGATCAATGAGAAAATGAAAGCTCTTCAGAACTTAATTCCCAATTCAAACAAGACGGACAAAGCTTCAATGTTGGATGAAGCAATTGAGTATTTGAAGCAGCTTCAACTTCAAGTCCAGATGTTATCAATGAGAAATGGCTTGAGTTTGCAACCAATGTGCTTGCCAGGAATGCTGCAGCCAATTCAACTACCTCAGATGGGGTTGGACTACGATGTAGGAAATGCATTTCTAACATCCCGAAGAGGAATAGATACATCGTCTACTAGGAACGAAGGATGTCCCATGCAATCTACATTCAATCTTACCAACAAATGTAACCTTTCAGATCAGTCAATTGCCATCCCTTCTGTACCAAACACCACAACCTCAGAAACTGCATTCGGTTTTGAACCCACAATTCAGGGTTATGATGGGGAGTTTAACCTGTCCTCCGATTTCAAGGATGGGGAACCAGCCGCACAGTTAGATTGCGCTCAGACGGGGAACGAGTCAACAGACGCTTCTTAG 1140 46.32 MADLYGTSPSSDVVGLPHDPEDFSSFINHHLQTTTSSASSPSCVSFKNKFMPLLHSQPPWHSSPMFSRRPDSTSVPGMSCMLDFPEDRLQSSRVLNHALSDCNVRDVRFADASYLAVNSTCGGVKLSDPGDFLKESSDNAFSSSGAVDSDTNAPLKRRGLSSENDLGDFSCDSEGGDLPEVPSSTNLPRNSSKRSRSAEVHNMSEKRRRRRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLQPMCLPGMLQPIQLPQMGLDYDVGNAFLTSRRGIDTSSTRNEGCPMQSTFNLTNKCNLSDQSIAIPSVPNTTTSETAFGFEPTIQGYDGEFNLSSDFKDGEPAAQLDCAQTGNESTDAS* 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18154564 18158701 + CsaV3_2G026540.1 Csa02g01934 519991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01934 379 Coils Coil 202 222 - -
Csa02g01934 379 SMART finulus 202 251 IPR011598 GO:0046983
Csa02g01934 379 Coils Coil 235 255 - -
Csa02g01934 379 CDD bHLH_AtPIF_like 196 258 - -
Csa02g01934 379 Gene3D - 191 255 IPR036638 GO:0046983
Csa02g01934 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 256 IPR036638 GO:0046983
Csa02g01934 379 PANTHER TRANSCRIPTION FACTOR SPATULA 21 359 - -
Csa02g01934 379 MobiDBLite consensus disorder prediction 137 211 - -
Csa02g01934 379 MobiDBLite consensus disorder prediction 179 193 - -
Csa02g01934 379 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 21 359 IPR031066 -
Csa02g01934 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Csa02g01934 379 MobiDBLite consensus disorder prediction 194 209 - -
Csa02g01934 379 Pfam Helix-loop-helix DNA-binding domain 200 246 IPR011598 GO:0046983
Csa02g01934 379 MobiDBLite consensus disorder prediction 137 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01934 - - - csv:105434642 759.985
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01934 Csa-Chr2:18154564 Csa07g01462 Csa-Chr7:14980031 1.66E-30 dispersed
Csa01g00267 Csa-Chr1:1668618 Csa02g01934 Csa-Chr2:18154564 3.87E-20 transposed
Csa02g01934 Csa-Chr2:18154564 Csa06g02951 Csa-Chr6:25541506 3.81E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g744 . . . . . . . . Cmo05g00172 Cmo12g00502 . . . Car12g00514 Sed10g1234 . Cpe07g00491 Bhi04g00369 Tan02g1798 Cmetu03g0637 . Hepe08g1296 . Lcy13g2092 . . . . . . . Cone4ag1587 Cone7ag1362 . . . . . Cme03g02063 Blo17g00875 . . . . . . Bma05g00041 . . . Cma12g00559 Cma05g00174 Car05g00147 . Cpe11g00143 . . . . . . . . . . . . . . . . Csa02g01934 Chy03g01556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007940 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30986 PF00010 HLH 2.30E-14 No_clan Csa TF