Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g01935 | ATGTCTAATTATGCCTTCTTGAATGACCAGCTCTCGAAGCGGACCTCCATTTTCGGTTTGCGTTTGTGGGTTGTTTTGGGTATTTGTGTTGGTGCTGCCATTGTTATTGTTCTCTTCCTCATTTCCTTATGGTTCACTTCCAGGCGTAACAGTTCCAATAAATCTAAACCCTCTTTGAACCCCATTATCCCAAATGTGTCTAAGGAAATCCAGGAAATACGAATTGACCATTCTCGGAACACTACTCATTCTGACCCCAAAGTTCAGTTGGCTTCTAACCCTGAGCCTTTGCCGGAGGCAGAGCCTTTAGCGACGCTGCTTCAGACGGAAGAAGGAAGCCCACCTAGTGGACGCCATAGAATTCACATTGAAATTGGGAAGGACCATCGGATTTCTTACCCAGAGAGAGGTGGCGGTTCGTCCCACGGAAGTGGAGAGGCTCGGTCTGGTGATCAGGCGCCAATGACTGTGCCGGAGGTTTCGCATTTGGGTTGGGGCCATTGGTATACTCTCAGAGAGCTTGAGTATTCTACTAATAGTTTTGCGGATGAAAATGTAATTGGTGAAGGCGGATATGGTATTGTGTACCGTGGGGTTCTTGAGGACAACACCGTGGTTGCCATCAAGAATTTGCTCAATAACAGAGGACAAGCTGAGAAGGAGTTTAAGGTTGAAGTGGAAGCAATTGGACGTGTTCGCCACAAGAATCTGGTGCGTTTGCTTGGCTATTGTGCTGAAGGAGCTCACAGGATACTTGTCTACGAGTACATTGATAATGGAAACTTGGAACAGTGGCTTCATGGAGAAGTTGGACCTTGTAGCCCTCTAACATGGGACATTCGAATGAATATAATTGTTGGAACAGCGAAAGGGTTAACATACCTCCACGAGGGACTCGAGCCTAAGGTTGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTTGACAAGCAGTGGAATCCAAAGGTCTCTGACTTCGGCCTAGCAAAGCTTTTAGGCTCAGAAAGGAGTTATGTAACAACTCGTGTGATGGGAACTTTCGGATACGTAGCTCCAGAATATGCAAGTACTGGCATGTTAAATGAAAAAAGTGATGTATATAGTTTTGGTATCCTCATTATGGAGATAATTTCAGGGAGAAATCCAGTAGATTATAGCCGCCCTTCAGGAGAGGTCAACCTAGTTGAGTGGCTTAAAACAATGGTTAGTAATCGAAATGCTGAGGGCGTTCTGGATCCTAAGTTGCCTGAAAAGCCTTCAACAAGGGCACTGAAGCGTGCTCTGTTAGTAGCTTTACGGTGTGTGGATCCTAATGTTCAGAAGAGGCCAAAAATGGGGCATGTAATTCATATGCTTGAAGCAGACGAGTTTCCTTTCCGAGATGATCGTAGAGTGGGACGAGAACCAGGACGATCACTACTGAAGGAAAAGCTCATGGAAAGGCTTGTGAGTGAATCCGGAGAAAGCAGCGGATATGAAAGTGGAGCAACACAAGCAAGCCGACATCTATGGAGAAAGCAAGAACTTGAAGAACAACAGCCTCGCGAACCTCACACTTTAAGGTGA | 1566 | 45.66 | MSNYAFLNDQLSKRTSIFGLRLWVVLGICVGAAIVIVLFLISLWFTSRRNSSNKSKPSLNPIIPNVSKEIQEIRIDHSRNTTHSDPKVQLASNPEPLPEAEPLATLLQTEEGSPPSGRHRIHIEIGKDHRISYPERGGGSSHGSGEARSGDQAPMTVPEVSHLGWGHWYTLRELEYSTNSFADENVIGEGGYGIVYRGVLEDNTVVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRILVYEYIDNGNLEQWLHGEVGPCSPLTWDIRMNIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIISGRNPVDYSRPSGEVNLVEWLKTMVSNRNAEGVLDPKLPEKPSTRALKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRVGREPGRSLLKEKLMERLVSESGESSGYESGATQASRHLWRKQELEEQQPREPHTLR* | 522 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 18160240 | 18163780 | + | CsaV3_2G026550.1 | Csa02g01935 | 519992 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g01935 | 521 | MobiDBLite | consensus disorder prediction | 487 | 501 | - | - | |
Csa02g01935 | 521 | SMART | serkin_6 | 181 | 459 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa02g01935 | 521 | Gene3D | Transferase(Phosphotransferase) domain 1 | 257 | 463 | - | - | |
Csa02g01935 | 521 | Pfam | Protein kinase domain | 182 | 450 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa02g01935 | 521 | SUPERFAMILY | Protein kinase-like (PK-like) | 161 | 453 | IPR011009 | - | |
Csa02g01935 | 521 | ProSitePatterns | Protein kinases ATP-binding region signature. | 187 | 209 | IPR017441 | GO:0005524 | |
Csa02g01935 | 521 | Gene3D | Phosphorylase Kinase; domain 1 | 154 | 256 | - | - | |
Csa02g01935 | 521 | PANTHER | RECEPTOR-LIKE KINASE PLANT | 5 | 497 | - | - | |
Csa02g01935 | 521 | MobiDBLite | consensus disorder prediction | 131 | 154 | - | - | |
Csa02g01935 | 521 | MobiDBLite | consensus disorder prediction | 482 | 521 | - | - | |
Csa02g01935 | 521 | PANTHER | OS01G0323000 PROTEIN | 5 | 497 | - | - | |
Csa02g01935 | 521 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 303 | 315 | IPR008271 | GO:0004672|GO:0006468 | |
Csa02g01935 | 521 | CDD | STKc_IRAK | 187 | 453 | - | - | |
Csa02g01935 | 521 | ProSiteProfiles | Protein kinase domain profile. | 181 | 439 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa02g01935 | 521 | MobiDBLite | consensus disorder prediction | 503 | 521 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01935 | Csa-Chr2:18160240 | Csa06g01183 | Csa-Chr6:9996093 | 0 | dispersed | |
Csa03g00872 | Csa-Chr3:7303454 | Csa02g01935 | Csa-Chr2:18160240 | 0 | transposed | |
Csa03g01658 | Csa-Chr3:12388590 | Csa02g01935 | Csa-Chr2:18160240 | 3.99E-69 | transposed | |
Csa03g01746 | Csa-Chr3:13084011 | Csa02g01935 | Csa-Chr2:18160240 | 1.69E-59 | transposed | |
Csa07g01264 | Csa-Chr7:12604981 | Csa02g01935 | Csa-Chr2:18160240 | 9.51E-177 | transposed | |
Csa02g01935 | Csa-Chr2:18160240 | Csa06g02950 | Csa-Chr6:25534935 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77913 | PF00069 | Pkinase | 2.70E-47 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g01935 | - | - | csv:101203008 | 1013.45 |