Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01935 ATGTCTAATTATGCCTTCTTGAATGACCAGCTCTCGAAGCGGACCTCCATTTTCGGTTTGCGTTTGTGGGTTGTTTTGGGTATTTGTGTTGGTGCTGCCATTGTTATTGTTCTCTTCCTCATTTCCTTATGGTTCACTTCCAGGCGTAACAGTTCCAATAAATCTAAACCCTCTTTGAACCCCATTATCCCAAATGTGTCTAAGGAAATCCAGGAAATACGAATTGACCATTCTCGGAACACTACTCATTCTGACCCCAAAGTTCAGTTGGCTTCTAACCCTGAGCCTTTGCCGGAGGCAGAGCCTTTAGCGACGCTGCTTCAGACGGAAGAAGGAAGCCCACCTAGTGGACGCCATAGAATTCACATTGAAATTGGGAAGGACCATCGGATTTCTTACCCAGAGAGAGGTGGCGGTTCGTCCCACGGAAGTGGAGAGGCTCGGTCTGGTGATCAGGCGCCAATGACTGTGCCGGAGGTTTCGCATTTGGGTTGGGGCCATTGGTATACTCTCAGAGAGCTTGAGTATTCTACTAATAGTTTTGCGGATGAAAATGTAATTGGTGAAGGCGGATATGGTATTGTGTACCGTGGGGTTCTTGAGGACAACACCGTGGTTGCCATCAAGAATTTGCTCAATAACAGAGGACAAGCTGAGAAGGAGTTTAAGGTTGAAGTGGAAGCAATTGGACGTGTTCGCCACAAGAATCTGGTGCGTTTGCTTGGCTATTGTGCTGAAGGAGCTCACAGGATACTTGTCTACGAGTACATTGATAATGGAAACTTGGAACAGTGGCTTCATGGAGAAGTTGGACCTTGTAGCCCTCTAACATGGGACATTCGAATGAATATAATTGTTGGAACAGCGAAAGGGTTAACATACCTCCACGAGGGACTCGAGCCTAAGGTTGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTTGACAAGCAGTGGAATCCAAAGGTCTCTGACTTCGGCCTAGCAAAGCTTTTAGGCTCAGAAAGGAGTTATGTAACAACTCGTGTGATGGGAACTTTCGGATACGTAGCTCCAGAATATGCAAGTACTGGCATGTTAAATGAAAAAAGTGATGTATATAGTTTTGGTATCCTCATTATGGAGATAATTTCAGGGAGAAATCCAGTAGATTATAGCCGCCCTTCAGGAGAGGTCAACCTAGTTGAGTGGCTTAAAACAATGGTTAGTAATCGAAATGCTGAGGGCGTTCTGGATCCTAAGTTGCCTGAAAAGCCTTCAACAAGGGCACTGAAGCGTGCTCTGTTAGTAGCTTTACGGTGTGTGGATCCTAATGTTCAGAAGAGGCCAAAAATGGGGCATGTAATTCATATGCTTGAAGCAGACGAGTTTCCTTTCCGAGATGATCGTAGAGTGGGACGAGAACCAGGACGATCACTACTGAAGGAAAAGCTCATGGAAAGGCTTGTGAGTGAATCCGGAGAAAGCAGCGGATATGAAAGTGGAGCAACACAAGCAAGCCGACATCTATGGAGAAAGCAAGAACTTGAAGAACAACAGCCTCGCGAACCTCACACTTTAAGGTGA 1566 45.66 MSNYAFLNDQLSKRTSIFGLRLWVVLGICVGAAIVIVLFLISLWFTSRRNSSNKSKPSLNPIIPNVSKEIQEIRIDHSRNTTHSDPKVQLASNPEPLPEAEPLATLLQTEEGSPPSGRHRIHIEIGKDHRISYPERGGGSSHGSGEARSGDQAPMTVPEVSHLGWGHWYTLRELEYSTNSFADENVIGEGGYGIVYRGVLEDNTVVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRILVYEYIDNGNLEQWLHGEVGPCSPLTWDIRMNIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIISGRNPVDYSRPSGEVNLVEWLKTMVSNRNAEGVLDPKLPEKPSTRALKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRVGREPGRSLLKEKLMERLVSESGESSGYESGATQASRHLWRKQELEEQQPREPHTLR* 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18160240 18163780 + CsaV3_2G026550.1 Csa02g01935 519992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01935 521 MobiDBLite consensus disorder prediction 487 501 - -
Csa02g01935 521 SMART serkin_6 181 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01935 521 Gene3D Transferase(Phosphotransferase) domain 1 257 463 - -
Csa02g01935 521 Pfam Protein kinase domain 182 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01935 521 SUPERFAMILY Protein kinase-like (PK-like) 161 453 IPR011009 -
Csa02g01935 521 ProSitePatterns Protein kinases ATP-binding region signature. 187 209 IPR017441 GO:0005524
Csa02g01935 521 Gene3D Phosphorylase Kinase; domain 1 154 256 - -
Csa02g01935 521 PANTHER RECEPTOR-LIKE KINASE PLANT 5 497 - -
Csa02g01935 521 MobiDBLite consensus disorder prediction 131 154 - -
Csa02g01935 521 MobiDBLite consensus disorder prediction 482 521 - -
Csa02g01935 521 PANTHER OS01G0323000 PROTEIN 5 497 - -
Csa02g01935 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Csa02g01935 521 CDD STKc_IRAK 187 453 - -
Csa02g01935 521 ProSiteProfiles Protein kinase domain profile. 181 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01935 521 MobiDBLite consensus disorder prediction 503 521 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01935 Csa-Chr2:18160240 Csa06g01183 Csa-Chr6:9996093 0 dispersed
Csa03g00872 Csa-Chr3:7303454 Csa02g01935 Csa-Chr2:18160240 0 transposed
Csa03g01658 Csa-Chr3:12388590 Csa02g01935 Csa-Chr2:18160240 3.99E-69 transposed
Csa03g01746 Csa-Chr3:13084011 Csa02g01935 Csa-Chr2:18160240 1.69E-59 transposed
Csa07g01264 Csa-Chr7:12604981 Csa02g01935 Csa-Chr2:18160240 9.51E-177 transposed
Csa02g01935 Csa-Chr2:18160240 Csa06g02950 Csa-Chr6:25534935 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77913 PF00069 Pkinase 2.70E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01935 - - csv:101203008 1013.45