Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01936 ATGGCTGATCAGGTTCAACATCCCACTATCTATCAGAAGGTTGCTGGTCAGCTCTCCCTTCAGTCGAGGGTTGCTTCGGGTTTCCGGGCTTGTGATGATGGCTTTAGAAATCCTGCACTCTATCAGAGACGTGCACCGATTACCAATTATTCCAATGCTGCTTTTCAATATCCTGCTGTGCAATCCTGTGTAGCTACAACTGACCTTTCTAGGGTTTCCTCAACCGCTTCCCCCATTTTTGTTGCTGCCCCTGCTGAGAAAGGAAACTTTATGCTTGACTTTCTTATGGGTGGTGTGTCTGCTGCTGTGTCCAAAACAGCTGCTGCCCCGATTGAGCGTGTCAAACTCTTAATTCAAAATCAAGATGAGATGATTAAATCTGGACGTTTGTCTGAGCCATACAAGGGTATTGGTGATTGTTTTAAGCGCACAATGCAAGAGGAGGGTTTCGGTTCATTGTGGAGAGGAAACACTGCCAATGTCATCCGTTATTTCCCCACTCAAGCATTGAACTTTGCTTTTAAGGATTACTTCAAGAGACTTTTCAACTTCAAGAAAGACAGGGATGGTTACTGGAAATGGTTTGCTGGTAACCTTGCATCCGGAGGTGCAGCCGGTGCTTCATCCCTTCTTTTTGTTTACTCTCTTGACTATGCGCGTACCCGATTGGCAAATGATGCCAAAGCTGCCAAGAAGGGTGGAGAAAGGCAATTCAATGGACTGGTTGATGTCTACAGGAAGACATTGCAGTCTGATGGTGTTGCTGGTTTATATCGTGGGTTTAACATTTCTTGCGTTGGTATCATTGTGTACCGTGGTTTATACTTCGGAATGTACGATTCTCTAAAGCCTGTTTTGTTGACCGGGAAGATGCAGGATAGTTTCTTCGCTAGCTTTGCTCTTGGTTGGCTCATCACCAACGGTGCCGGTCTTGCATCCTACCCAATTGACACTGTTCGTAGAAGAATGATGATGACATCTGGTGAAGCAGTGAAGTACAAGAGCTCAATGGATGCCTTCTCTCAGATCTTGAAGAACGAAGGTGCCAAGTCTCTCTTCAAGGGTGCTGGTGCTAACATTCTCCGTGCCGTTGCTGGTGCTGGTGTGCTTGCCGGTTACGATAAGTTGCAGGTGATCGTCTTCGGGAAGAAATACGGATCTGGTGGCGCTTAA 1173 46.38 MADQVQHPTIYQKVAGQLSLQSRVASGFRACDDGFRNPALYQRRAPITNYSNAAFQYPAVQSCVATTDLSRVSSTASPIFVAAPAEKGNFMLDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMQEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLQSDGVAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSMDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVFGKKYGSGGA* 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18165384 18168272 - CsaV3_2G026560.1 Csa02g01936 519993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01936 390 Pfam Mitochondrial carrier protein 192 288 IPR018108 -
Csa02g01936 390 Pfam Mitochondrial carrier protein 293 379 IPR018108 -
Csa02g01936 390 Pfam Mitochondrial carrier protein 89 185 IPR018108 -
Csa02g01936 390 ProSiteProfiles Solute carrier (Solcar) repeat profile. 293 379 IPR018108 -
Csa02g01936 390 PANTHER ADP,ATP CARRIER PROTEIN 1, MITOCHONDRIAL-LIKE 2 390 - -
Csa02g01936 390 PRINTS Mitochondrial carrier protein signature 93 106 IPR002067 GO:0055085
Csa02g01936 390 PRINTS Mitochondrial carrier protein signature 106 120 IPR002067 GO:0055085
Csa02g01936 390 PRINTS Mitochondrial carrier protein signature 156 176 IPR002067 GO:0055085
Csa02g01936 390 PRINTS Mitochondrial carrier protein signature 208 226 IPR002067 GO:0055085
Csa02g01936 390 PRINTS Mitochondrial carrier protein signature 258 276 IPR002067 GO:0055085
Csa02g01936 390 PRINTS Mitochondrial carrier protein signature 302 324 IPR002067 GO:0055085
Csa02g01936 390 PRINTS Adenine nucleotide translocator signature 90 102 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Csa02g01936 390 PRINTS Adenine nucleotide translocator signature 134 155 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Csa02g01936 390 PRINTS Adenine nucleotide translocator signature 167 179 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Csa02g01936 390 PRINTS Adenine nucleotide translocator signature 193 206 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Csa02g01936 390 PRINTS Adenine nucleotide translocator signature 298 314 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Csa02g01936 390 SUPERFAMILY Mitochondrial carrier 88 375 IPR023395 -
Csa02g01936 390 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 2 390 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Csa02g01936 390 ProSiteProfiles Solute carrier (Solcar) repeat profile. 88 181 IPR018108 -
Csa02g01936 390 ProSiteProfiles Solute carrier (Solcar) repeat profile. 193 285 IPR018108 -
Csa02g01936 390 Gene3D Mitochondrial carrier domain 91 386 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00624 Csa-Chr1:3987222 Csa02g01936 Csa-Chr2:18165384 1.59E-131 dispersed
Csa02g01936 Csa-Chr2:18165384 Csa07g00489 Csa-Chr7:3541649 0 dispersed
Csa02g01936 Csa-Chr2:18165384 Csa02g01937 Csa-Chr2:18170328 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01936 K05863 - csv:101203733 754.592