Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01940 ATGTCTGTAATGCTTGACAATTGTGAAGGCATCTTACTTTCTTTGGACTCTCACAAGTCTGTACCTGCCCCTTTCCTCTCCAAAACCTATCAATTAGTCGACGACCCCTCCACCGATCACATTGTCTCCTGGGGCGAAGACGACACCACTTTCGTAGTCTGGCGTCCTCCCGAGTTCGCTCGCGATCTCCTTCCTAACTACTTCAAACACAACAACTTCTCTAGCTTCGTTCGTCAGCTCAACACCTACGGTTTTAGAAAGATTGTGCCAGACAGATGGGAGTTTGCAAATGAGTTCTTCAGAAAAGGAGAAAAACATTTGTTATGCGAGATTCATAGACGAAAAACTGCTCAGCCACAACTGCCTTACACCCATCACCATCTTGGAAACATTAACGGTCCTAGTTTTTTCCCATTTTCGACACGAGTTAGCATCTCGCCGTCCGATTCAGATGAGCAAATCAATTGGTGCGACTCACCGCCAGTGCCACCGAGGGCTACGGGGACAGGTGGATATTCGGTTATGGGAAGTGGAATTATTAGTAACAATAGTAGTACGAGTAATTACAATATGATGAGTTCGGTGACAGCTTTGTCTGAGGATAATGAGAGGTTAAGAAGGAATAACTCTATGCTGATTTCGGAGCTTAGTCATATGAGGAAACTTTATAATGATATTATCTATTTTGTTCAAAACCATGTGAAGCCTGTTTCTCCTAGCAATTCTTTCCCTTCTTTACTTCTCTCTCATCATCCTTCTACTACTAATTCCCAAAAACCCCTTAATCATTTTCTTGGGATCTCTCCTCCTAATACTACTTCAACTACTACAAATCACTTTTCCGTTCCTGGTACTATTGTTACAACTCACTTTGTGAGCTCTCCAACTGCAACGTCTAAGAGTGCAGTTACGGAGCTTGACGTTGGAGAAGCTGATAACAATAGTTGCAAAACCAAGCTGTTCGGAGTGGCGATTTCATCATCTAAAAAGAGGATGCATCCTGATACTACTACTAATTATGTTTCTATTTGTTCCAATGTCTCAGATACCAACAAGAATTCTCGCTTGATCTTGGAAAAAGGTGACAATTTGGGGCTCAATCTTATGCCTCCTTCCACCTCCTAG 1125 42.58 MSVMLDNCEGILLSLDSHKSVPAPFLSKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFRKGEKHLLCEIHRRKTAQPQLPYTHHHLGNINGPSFFPFSTRVSISPSDSDEQINWCDSPPVPPRATGTGGYSVMGSGIISNNSSTSNYNMMSSVTALSEDNERLRRNNSMLISELSHMRKLYNDIIYFVQNHVKPVSPSNSFPSLLLSHHPSTTNSQKPLNHFLGISPPNTTSTTTNHFSVPGTIVTTHFVSSPTATSKSAVTELDVGEADNNSCKTKLFGVAISSSKKRMHPDTTTNYVSICSNVSDTNKNSRLILEKGDNLGLNLMPPSTS* 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18190063 18192001 + CsaV3_2G026600.1 Csa02g01940 519997

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01940 374 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Csa02g01940 374 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Csa02g01940 374 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Csa02g01940 374 PANTHER BNAC06G00310D PROTEIN 12 373 - -
Csa02g01940 374 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Csa02g01940 374 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Csa02g01940 374 Coils Coil 195 215 - -
Csa02g01940 374 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Csa02g01940 374 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 373 IPR027725 -
Csa02g01940 374 Gene3D - 17 116 IPR036388 -
Csa02g01940 374 SUPERFAMILY Winged helix DNA-binding domain 22 114 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01940 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101218781 719.539
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01940 Csa04g02421 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03238 Csa-Chr1:28539621 Csa02g01940 Csa-Chr2:18190063 2.14E-65 dispersed
Csa02g01940 Csa-Chr2:18190063 Csa05g00316 Csa-Chr5:1968211 2.62E-55 dispersed
Csa02g01940 Csa-Chr2:18190063 Csa04g02421 Csa-Chr4:24404244 1.08E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g752 Blo01g01525 . Bda01g00571 Bda03g00208 Bpe02g00432 Bpe04g00177 . Bma01g02269 Cmo05g00175 . Cma01g01832 Cma09g00239 Car01g01429 . Sed10g1244 Cpe06g00166 . Bhi04g00361 Tan02g1805 Cmetu03g2201 . Hepe08g1292 . Lcy13g2088 Cla08g01578 Cam08g2076 Cec08g1659 Cco08g1787 Clacu08g1762 . Cre08g1547 Cone4ag1583 Cone7ag1367 Cone17ag0846 Cone20ag0194 Lsi04g01548 Csa04g02421 . Cme03g02056 . . . . . Bpe05g00026 . . Sed01g2675 Cmo01g01891 Cmo09g00233 . Cma05g00178 Car05g00150 . Cpe11g00146 Cpe02g00187 Bhi09g03307 Tan01g4763 Cmetu07g0842 . Hepe01g1775 Mch11g0300 . Cla05g02052 Cam05g2203 Cec05g2220 Cco05g2263 Clacu05g2195 Cmu05g2061 Cre05g2189 Lsi08g01481 Csa02g01940 Chy07g00142 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g01291 . 7 237 HSF AT4G17750 53.7 8.3e-62 235.0
Csa07g01697 . 41 281 HSF AT4G17750 51.0 1.3e-59 227.6
Csa02g01831 . 43 243 HSF AT4G17750 53.2 3.0e-59 226.5
Csa02g01172 . 26 226 HSF AT4G17750 55.8 1.9e-58 223.8
Csa01g02297 CCT,ECH 13 191 HSF AT4G17750 50.3 1.2e-44 177.9
Csa02g01940 CCT 20 118 HSF AT4G17750 71.7 5.8e-39 159.1
Csa04g02421 CCT 20 118 HSF AT4G17750 69.7 2.2e-38 157.1
Csa05g00316 CCT 382 505 HSF AT4G17750 60.5 2.2e-38 157.1
Csa03g00150 . 21 517 HSF AT5G16820 51.2 1.7e-99 360.1
Csa03g01291 . 38 242 HSF AT5G16820 56.5 1.3e-59 227.6
Csa02g01172 . 39 226 HSF AT5G16820 57.1 4.1e-58 222.6
Csa07g01697 . 42 251 HSF AT5G16820 54.7 1.2e-57 221.1
Csa02g01831 . 44 243 HSF AT5G16820 53.1 1.9e-55 213.8
Csa03g00150 . 13 514 HSF AT1G32330 54.1 8.2e-123 437.6
Csa03g01291 . 26 227 HSF AT1G32330 53.5 1.7e-59 227.3
Csa07g01697 . 30 247 HSF AT1G32330 52.7 2.2e-59 226.9
Csa02g01172 . 27 226 HSF AT1G32330 54.1 2.4e-58 223.4
Csa02g01831 . 32 224 HSF AT1G32330 54.6 5.6e-55 212.2
Csa06g01363 . 8 148 HSF AT1G32330 55.7 1.6e-41 167.5
Csa02g01940 CCT 20 117 HSF AT1G32330 71.4 3.7e-38 156.4
Csa03g01291 . 38 241 HSF AT3G02990 56.2 6.6e-61 231.9
Csa07g01697 . 42 259 HSF AT3G02990 54.5 1.5e-60 230.7
Csa02g01172 . 39 226 HSF AT3G02990 56.3 6.9e-58 221.9
Csa02g01831 . 44 243 HSF AT3G02990 52.2 1.3e-56 217.6
Csa03g01291 . 15 270 HSF AT2G26150 52.5 4.9e-69 258.5
Csa07g01697 . 30 246 HSF AT2G26150 56.4 7.8e-67 251.1
Csa03g00150 . 29 243 HSF AT2G26150 58.8 6.4e-61 231.5
Csa02g01172 . 29 232 HSF AT2G26150 51.2 4.2e-60 228.8
Csa02g00041 . 48 248 HSF AT2G26150 51.7 7.8e-51 198.0
Csa06g01363 . 5 118 HSF AT2G26150 60.5 3.8e-37 152.5
Csa03g03376 . 116 357 HSF AT5G03720 56.9 1.1e-70 264.2
Csa03g01069 . 3 460 HSF AT4G13980 51.8 3.6e-115 412.1
Csa06g01363 . 4 183 HSF AT4G13980 51.7 8.7e-45 178.3
Csa07g01697 . 1 368 HSF AT3G22830 50.1 3.0e-94 342.4
Csa03g01291 . 21 347 HSF AT3G22830 52.2 1.4e-91 333.6
Csa02g01831 . 32 241 HSF AT3G22830 55.2 9.5e-64 241.1
Csa03g00150 . 29 242 HSF AT3G22830 59.3 3.6e-63 239.2
Csa02g00041 . 48 260 HSF AT3G22830 50.2 6.4e-52 201.8
Csa07g01697 . 29 343 HSF AT3G51910 50.9 1.4e-71 266.5
Csa02g01172 . 26 323 HSF AT3G51910 53.0 4.6e-70 261.5
Csa03g01291 . 26 238 HSF AT3G51910 58.4 3.5e-62 235.3
Csa02g01831 . 32 224 HSF AT3G51910 56.5 5.4e-55 211.5
Csa02g01831 . 32 231 HSF AT3G63350 52.7 2.9e-51 199.1
Csa06g01363 . 5 152 HSF AT3G63350 54.8 5.6e-39 158.3
Csa05g01128 . 12 283 HSF AT1G67970 51.1 1.0e-67 254.2
Csa07g01697 . 43 233 HSF AT1G67970 51.0 4.8e-46 182.2
Csa03g01695 CCT 17 190 HSF AT4G36990 50.9 2.3e-40 162.9
Csa05g00316 CCT 404 725 HSF AT4G11660 52.6 9.7e-79 290.8
Csa04g02421 CCT 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Csa02g01940 CCT 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Csa06g02938 . 2 100 HSF AT4G11660 73.7 9.5e-42 167.9
Csa01g03238 . 26 119 HSF AT4G11660 70.2 4.1e-37 152.5
Csa03g00150 . 31 126 HSF AT4G11660 68.8 7.0e-37 151.8
Csa03g03764 . 22 115 HSF AT4G11660 72.3 2.1e-36 150.2
Csa04g01086 . 37 215 HSF AT2G41690 52.7 3.7e-47 185.3
Csa03g03764 . 22 221 HSF AT2G41690 50.2 4.9e-47 184.9
Csa02g01940 CCT 19 373 HSF AT1G46264 51.4 2.4e-87 319.3
Csa04g02421 CCT 19 327 HSF AT1G46264 54.6 5.2e-87 318.2
Csa01g03238 . 18 200 HSF AT1G46264 53.8 1.1e-52 204.1
Csa03g00150 . 31 138 HSF AT1G46264 72.2 2.6e-41 166.4
Csa06g01363 . 5 105 HSF AT1G46264 68.3 1.7e-37 153.7
Csa02g01172 . 32 146 HSF AT1G46264 59.1 3.8e-37 152.5
Csa07g01697 . 33 142 HSF AT1G46264 63.6 1.1e-36 151.0
Csa01g01715 CCT 10 292 HSF AT3G24520 50.9 1.6e-64 243.4
Csa03g01291 . 7 237 HSF AT4G17750 53.7 8.3e-62 235.0
Csa07g01697 . 41 281 HSF AT4G17750 51.0 1.3e-59 227.6
Csa02g01831 . 43 243 HSF AT4G17750 53.2 3.0e-59 226.5
Csa02g01172 . 26 226 HSF AT4G17750 55.8 1.9e-58 223.8
Csa01g02297 CCT,ECH 13 191 HSF AT4G17750 50.3 1.2e-44 177.9
Csa02g01940 CCT 20 118 HSF AT4G17750 71.7 5.8e-39 159.1
Csa04g02421 CCT 20 118 HSF AT4G17750 69.7 2.2e-38 157.1
Csa05g00316 CCT 382 505 HSF AT4G17750 60.5 2.2e-38 157.1
Csa03g00150 . 21 517 HSF AT5G16820 51.2 1.7e-99 360.1
Csa03g01291 . 38 242 HSF AT5G16820 56.5 1.3e-59 227.6
Csa02g01172 . 39 226 HSF AT5G16820 57.1 4.1e-58 222.6
Csa07g01697 . 42 251 HSF AT5G16820 54.7 1.2e-57 221.1
Csa02g01831 . 44 243 HSF AT5G16820 53.1 1.9e-55 213.8
Csa03g00150 . 13 514 HSF AT1G32330 54.1 8.2e-123 437.6
Csa03g01291 . 26 227 HSF AT1G32330 53.5 1.7e-59 227.3
Csa07g01697 . 30 247 HSF AT1G32330 52.7 2.2e-59 226.9
Csa02g01172 . 27 226 HSF AT1G32330 54.1 2.4e-58 223.4
Csa02g01831 . 32 224 HSF AT1G32330 54.6 5.6e-55 212.2
Csa06g01363 . 8 148 HSF AT1G32330 55.7 1.6e-41 167.5
Csa02g01940 CCT 20 117 HSF AT1G32330 71.4 3.7e-38 156.4
Csa03g01291 . 38 241 HSF AT3G02990 56.2 6.6e-61 231.9
Csa07g01697 . 42 259 HSF AT3G02990 54.5 1.5e-60 230.7
Csa02g01172 . 39 226 HSF AT3G02990 56.3 6.9e-58 221.9
Csa02g01831 . 44 243 HSF AT3G02990 52.2 1.3e-56 217.6
Csa03g01291 . 15 270 HSF AT2G26150 52.5 4.9e-69 258.5
Csa07g01697 . 30 246 HSF AT2G26150 56.4 7.8e-67 251.1
Csa03g00150 . 29 243 HSF AT2G26150 58.8 6.4e-61 231.5
Csa02g01172 . 29 232 HSF AT2G26150 51.2 4.2e-60 228.8
Csa02g00041 . 48 248 HSF AT2G26150 51.7 7.8e-51 198.0
Csa06g01363 . 5 118 HSF AT2G26150 60.5 3.8e-37 152.5
Csa03g03376 . 116 357 HSF AT5G03720 56.9 1.1e-70 264.2
Csa03g01069 . 3 460 HSF AT4G13980 51.8 3.6e-115 412.1
Csa06g01363 . 4 183 HSF AT4G13980 51.7 8.7e-45 178.3
Csa07g01697 . 1 368 HSF AT3G22830 50.1 3.0e-94 342.4
Csa03g01291 . 21 347 HSF AT3G22830 52.2 1.4e-91 333.6
Csa02g01831 . 32 241 HSF AT3G22830 55.2 9.5e-64 241.1
Csa03g00150 . 29 242 HSF AT3G22830 59.3 3.6e-63 239.2
Csa02g00041 . 48 260 HSF AT3G22830 50.2 6.4e-52 201.8
Csa07g01697 . 29 343 HSF AT3G51910 50.9 1.4e-71 266.5
Csa02g01172 . 26 323 HSF AT3G51910 53.0 4.6e-70 261.5
Csa03g01291 . 26 238 HSF AT3G51910 58.4 3.5e-62 235.3
Csa02g01831 . 32 224 HSF AT3G51910 56.5 5.4e-55 211.5
Csa02g01831 . 32 231 HSF AT3G63350 52.7 2.9e-51 199.1
Csa06g01363 . 5 152 HSF AT3G63350 54.8 5.6e-39 158.3
Csa05g01128 . 12 283 HSF AT1G67970 51.1 1.0e-67 254.2
Csa07g01697 . 43 233 HSF AT1G67970 51.0 4.8e-46 182.2
Csa03g01695 CCT 17 190 HSF AT4G36990 50.9 2.3e-40 162.9
Csa05g00316 CCT 404 725 HSF AT4G11660 52.6 9.7e-79 290.8
Csa04g02421 CCT 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Csa02g01940 CCT 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Csa06g02938 . 2 100 HSF AT4G11660 73.7 9.5e-42 167.9
Csa01g03238 . 26 119 HSF AT4G11660 70.2 4.1e-37 152.5
Csa03g00150 . 31 126 HSF AT4G11660 68.8 7.0e-37 151.8
Csa03g03764 . 22 115 HSF AT4G11660 72.3 2.1e-36 150.2
Csa04g01086 . 37 215 HSF AT2G41690 52.7 3.7e-47 185.3
Csa03g03764 . 22 221 HSF AT2G41690 50.2 4.9e-47 184.9
Csa02g01940 CCT 19 373 HSF AT1G46264 51.4 2.4e-87 319.3
Csa04g02421 CCT 19 327 HSF AT1G46264 54.6 5.2e-87 318.2
Csa01g03238 . 18 200 HSF AT1G46264 53.8 1.1e-52 204.1
Csa03g00150 . 31 138 HSF AT1G46264 72.2 2.6e-41 166.4
Csa06g01363 . 5 105 HSF AT1G46264 68.3 1.7e-37 153.7
Csa02g01172 . 32 146 HSF AT1G46264 59.1 3.8e-37 152.5
Csa07g01697 . 33 142 HSF AT1G46264 63.6 1.1e-36 151.0
Csa01g01715 CCT 10 292 HSF AT3G24520 50.9 1.6e-64 243.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002351 3 2 1 1 3 2 2 1 2 2 2 2 3 2 2 3 2 2 3 1 2 2 2 2 2 2 2 3 3 1 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30987 PF00447 HSF_DNA-bind 3.10E-32 CL0123 Csa TF