Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01941 ATGGATATTGAGGAGATGGGAAAGTTTGGAGAGAATTTTGAATGTAATGAAATTGCAACTAGTTTGGATTTTGGTTTTGGTAGTTCCAATATTACTTCCACTTCACATCCTATTTTTCCGTCTTTTAACAATATCCCACCAACCACTCTTTCTATGAATAACGCCACTCACGCTGTTGCACCGCCGTCTTTTCCGCCCTATTCCGCCGCTGCCCGGTGGAGATCCCATTTTCCAGCCACCCGAAATTCCCGCATGGCAGGGGAGGAGGAAGTGGAAGGATCAGAATCAGAATCAATGGGGGGAGGGATGAGAGAGATGATATACAGAATAGCAGCAATGCAGCCAATAGAGATAGACCCAGAAGCAGTGAAGGCACCAAAGCGACGGAATGTTAAGATTTCAAAAGATCCACAGAGCGTAGCGGCAAGGCATAGACGAGAGAGAATTAGCGAAAGAATCAGAATTCTTCAAAGAATAGTCCCAGGTGGCACCAAAATGGACACCGCTTCCATGTTAGACGAAGCCATTCATTACCTTAAGTTTTTGAAAAACCAACTCCATTCACTCCAAATCGCCGCCGCCTCCTCCTCCTCCTCCTCCTCCTCATCCTCCGCCTACGCCTTTCCCACCATCGCTCATTATAATAATAAACAACAACACTTGATCCACTTTCCTCAATTGCCAACCCATCCACATCACCACCTGAACCAAGATGCCTGA 720 46.25 MDIEEMGKFGENFECNEIATSLDFGFGSSNITSTSHPIFPSFNNIPPTTLSMNNATHAVAPPSFPPYSAAARWRSHFPATRNSRMAGEEEVEGSESESMGGGMREMIYRIAAMQPIEIDPEAVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYLKFLKNQLHSLQIAAASSSSSSSSSSAYAFPTIAHYNNKQQHLIHFPQLPTHPHHHLNQDA* 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18201502 18202748 + CsaV3_2G026610.1 Csa02g01941 519998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01941 239 Pfam Helix-loop-helix DNA-binding domain 143 182 IPR011598 GO:0046983
Csa02g01941 239 Gene3D - 132 202 IPR036638 GO:0046983
Csa02g01941 239 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 37 215 - -
Csa02g01941 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Csa02g01941 239 SMART finulus 139 188 IPR011598 GO:0046983
Csa02g01941 239 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 37 215 IPR045843 GO:0003700|GO:0006355
Csa02g01941 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 191 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01941 Csa04g02418 CCT
Csa02g01941 Csa04g02418 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01941 Csa-Chr2:18201502 Csa06g02787 Csa-Chr6:24304724 2.68E-44 dispersed
Csa02g01941 Csa-Chr2:18201502 Csa04g02418 Csa-Chr4:24394485 2.81E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30988 PF00010 HLH 9.90E-07 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01941 - - csv:105434749 427.943