Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01942 ATGCAAAAGGGGTGGAGCTCAGAGCGTGTGCCATTGCACAACAATGGTGGTCGGAAACATGCTAATAACCCTGCATTGCTGACTCTTAATAGCGGCAGAACATTGCCATCAAAGTGGGAAGATGCTGAAAGGTGGATCTTTAGTCCCATATCCGGTGATGGGGTTGTGAGGAACTCAGTTCCACTTCCTCAACGGCGACCGAAGTCAAAGAGTGGGCCACTTGGCCCTCCTGGTTCTGCATACTATTCACTATATTCGCCAGCAGTTCCGGCCTACGAAGGTGGGAGTTTTGGGAATTTCATTACAGGGTCACCATTTTCAGCTGGAGTGATATCAGCTAATAGCTTGGGGATTCATTCCGGTGGGCATGAAGTGGCCTTTCATGGACAAACAGAGCCCTCCATGGCGCGATCACTTAGTGTTCATGGATGCTCTGAAATGTTGGGTCAATTGTCATCAACAACAGGCTTACAAGAAGAATCAGGCGACATTCTAACTAGAGTCAAGGATTCAGGGACGGATGTTTCTCGTGTTGTTTCAAGAAGGGACATGGCTACACAAATGAGCCCAGAGAGTAGTGTCCATTCATCTCCCAAGACGAGACCGTCAATCTCTGCCTCAAGTTCATCTGCTATGCATATGTTTGAGCTGGGAGCTGTCACTTCTAAGTTGGAGATCAGGGATGTACAAGTTGATAATCAAGTTACTATGACAAGATGGTCTAAGAAACATAAAGGCTCGTTTCCTTGGAAAGACTCTCTTGATGACAGGAGGAAGAAAGATGTTGATGCGGTTTCTCGATGTTCGGATCTAGACATTCCTCACATAGGAAAAAGTATTTCAAAGGTTAAGCGTGAGGAAGCCAAAATAACTGCATGGGAAAATCTACAGAAAGCAAAAGCTGATGCAGCTATACGGAAACTAGAGATGAAGCTGGAAAAGAAGAGAGCAACGTCAATGGATAAGATCATGAATAAACTTAAATCTGCTCAGAAGAGAGCCCAAGAAATGAGGAGCTCAGTGATGGCAAACCAGTCCCCCCAAGATAACAGGACATCTATCAAGTCTCTATCTTTTTATCGAGCCCGTCCTATGGGTTCCCTAAGTGGTTGTTTCACCTGCCATGCTTTTTAG 1134 45.5 MQKGWSSERVPLHNNGGRKHANNPALLTLNSGRTLPSKWEDAERWIFSPISGDGVVRNSVPLPQRRPKSKSGPLGPPGSAYYSLYSPAVPAYEGGSFGNFITGSPFSAGVISANSLGIHSGGHEVAFHGQTEPSMARSLSVHGCSEMLGQLSSTTGLQEESGDILTRVKDSGTDVSRVVSRRDMATQMSPESSVHSSPKTRPSISASSSSAMHMFELGAVTSKLEIRDVQVDNQVTMTRWSKKHKGSFPWKDSLDDRRKKDVDAVSRCSDLDIPHIGKSISKVKREEAKITAWENLQKAKADAAIRKLEMKLEKKRATSMDKIMNKLKSAQKRAQEMRSSVMANQSPQDNRTSIKSLSFYRARPMGSLSGCFTCHAF* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18204569 18208960 - CsaV3_2G026620.1 Csa02g01942 519999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01942 377 MobiDBLite consensus disorder prediction 56 77 - -
Csa02g01942 377 PANTHER OS02G0116800 PROTEIN 1 375 - -
Csa02g01942 377 MobiDBLite consensus disorder prediction 172 209 - -
Csa02g01942 377 MobiDBLite consensus disorder prediction 1 31 - -
Csa02g01942 377 PANTHER REMORIN FAMILY PROTEIN 1 375 - -
Csa02g01942 377 MobiDBLite consensus disorder prediction 180 209 - -
Csa02g01942 377 Coils Coil 298 318 - -
Csa02g01942 377 Pfam Remorin, C-terminal region 277 356 IPR005516 -
Csa02g01942 377 Coils Coil 320 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01942 - - - csv:101202771 723.391
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01942 Csa04g02412 CCT
Csa02g01942 Csa04g02412 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01942 Csa-Chr2:18204569 Csa06g03819 Csa-Chr6:30287962 2.44E-12 dispersed
Csa03g03666 Csa-Chr3:32631873 Csa02g01942 Csa-Chr2:18204569 7.77E-09 transposed
Csa02g01942 Csa-Chr2:18204569 Csa04g02412 Csa-Chr4:24356732 4.10E-131 wgd
Csa02g01942 Csa-Chr2:18204569 Csa06g02942 Csa-Chr6:25484520 5.86E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g756 . Blo12g00958 . Bda03g00210 . . Bma04g00162 . Cmo05g00178 Cmo12g00500 . Cma09g00233 . Car12g00511 Sed11g0942 . . Bhi04g00359 Tan02g1815 Cmetu03g0006 . Hepe08g1289 . Lcy13g2086 Cla08g01576 Cam08g2074 Cec08g1654 Cco08g1785 Clacu08g1761 . Cre08g1545 Cone4ag1581 Cone7ag1370 Cone17ag0845 Cone20ag0193 Lsi04g01558 Csa04g02412 . Cme03g02054 Blo17g00880 . . . . Bpe05g00024 . Bma05g00037 Sed13g1753 . Cmo09g00226 Cma12g00556 . Car05g00152 . . . Bhi09g03315 Tan01g4778 Cmetu07g0900 . . . . Cla05g02044 Cam05g2194 Cec05g2212 Cco05g2257 Clacu05g2188 Cmu05g2054 Cre05g2183 Lsi08g01479 Csa02g01942 Chy07g00136 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005157 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 0 1 1 1 1 1 1 1 1 6 2 1 41