Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01943 ATGAATTTCAAAGATTTTGGGAATGACCCATCTGGCGGGAACGGAGGCGGAGGTGGAAGACCTCCGGCGAACTATCCATTAGCGCGACAATCGTCGATCTACTCAATGACCTTCGATGAGTTTCAGAGCATGGGGAGTATAGGAAAGGATTTTGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACAATGGCATCTTCTGCTGCTGCTGTTGGTAAAGAAGGGGGTGGTAGTGCTGGTGGTAGTAGTGGTTATTTGCAGAGACAGGGGTCTTTGACGCTGCCTCGAACACTCAGCCAGAAGAAGGTGGATGAGGTATGGAAGGACATAATCAATGAACATGCTAGTGCTAAAGACGGGGCTACCCTTGCTCCTAATTTGCAACAGAGGCAGCAAACTCTCGGGGAGGTGACCCTCGAAGAGTTTTTATTCAGAGCTGGAGTGGTGAGAGAGGATACTCAAGTAACTGCAAACCCCAACAATGGAGGGTTCTTCGGCAATAACACCGGTTTTGGAATTGCTTTTCAGCGGCAGCCGAAAGTTCCTGAGAATAACAATCACATTCAGATTCAATCGTCCAACTTATCGCTGAATGCCAATGGAGTTCGAGCACATCAGCCGCAGCCAATATTTCCAAAGCAGGCGACTTTGACATATGGATCTCAGTTGACTTTACCCAGTGATGCTCAGCTGGCTAGTCCAGGAATTAGAGGTGGAATTATGGGGATTGCAGATCAAGGGCTGAATACAAATTTGATGCAAGGCACCGCACTGCAGGGTGGAAGAATGGGAGTGGTCAATATAGCAGCTGCTCCGTTACCTATTGCCACAGAATCGCCAGGGAACCAACTATCCTCTGATGGAATCGGAAAGAGCAATGGTGATACCTCTTCAGTGTCTCCTGTGCCTTACGCCCTTAATGGTGGAATCAGGGGGAGGAGAGGTAATGGGATTGTCGACAAAGTTGTTGAGAGGAGGCAACGGAGAATGATTAAAAACAGAGAGTCCGCTGCAAGATCTCGGGCGCGAAAGCAGGCTTACACAATGGAATTGGAAGCAGAAGTTGCAAAGCTAAAAGAGGAGAACCAAGAACTCCGGCAGAAACAGGCAGAAATCATGGAAATGCAGAAGAACCGGGCATTGGAAGTAATGGATAAGCAACAAGGAATCAAGAAGCGATGTTTAAGACGAACGCAGACTGGCCCATGGTGA 1236 47.98 MNFKDFGNDPSGGNGGGGGRPPANYPLARQSSIYSMTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSAAAVGKEGGGSAGGSSGYLQRQGSLTLPRTLSQKKVDEVWKDIINEHASAKDGATLAPNLQQRQQTLGEVTLEEFLFRAGVVREDTQVTANPNNGGFFGNNTGFGIAFQRQPKVPENNNHIQIQSSNLSLNANGVRAHQPQPIFPKQATLTYGSQLTLPSDAQLASPGIRGGIMGIADQGLNTNLMQGTALQGGRMGVVNIAAAPLPIATESPGNQLSSDGIGKSNGDTSSVSPVPYALNGGIRGRRGNGIVDKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRQKQAEIMEMQKNRALEVMDKQQGIKKRCLRRTQTGPW* 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18211483 18214997 - CsaV3_2G026630.1 Csa02g01943 520000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01943 411 Pfam bZIP transcription factor 333 385 IPR004827 GO:0003700|GO:0006355
Csa02g01943 411 CDD bZIP_plant_BZIP46 333 385 - -
Csa02g01943 411 SUPERFAMILY Leucine zipper domain 333 381 IPR046347 GO:0003700|GO:0006355
Csa02g01943 411 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 199 411 IPR043452 GO:0003700|GO:0045893
Csa02g01943 411 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 5 174 IPR043452 GO:0003700|GO:0045893
Csa02g01943 411 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 331 382 IPR004827 GO:0003700|GO:0006355
Csa02g01943 411 Coils Coil 349 386 - -
Csa02g01943 411 MobiDBLite consensus disorder prediction 286 307 - -
Csa02g01943 411 MobiDBLite consensus disorder prediction 76 95 - -
Csa02g01943 411 Gene3D - 331 388 - -
Csa02g01943 411 SMART brlzneu 329 393 IPR004827 GO:0003700|GO:0006355
Csa02g01943 411 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 336 351 IPR004827 GO:0003700|GO:0006355
Csa02g01943 411 MobiDBLite consensus disorder prediction 1 26 - -
Csa02g01943 411 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 174 - -
Csa02g01943 411 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 199 411 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01943 Csa-Chr2:18211483 Csa06g00456 Csa-Chr6:3897355 6.85E-17 dispersed
Csa03g00060 Csa-Chr3:522366 Csa02g01943 Csa-Chr2:18211483 2.93E-18 transposed
Csa04g01836 Csa-Chr4:18003140 Csa02g01943 Csa-Chr2:18211483 2.25E-15 transposed
Csa06g00517 Csa-Chr6:4378319 Csa02g01943 Csa-Chr2:18211483 3.04E-16 transposed
Csa06g02345 Csa-Chr6:21008610 Csa02g01943 Csa-Chr2:18211483 6.29E-07 transposed
Csa02g01943 Csa-Chr2:18211483 Csa07g00751 Csa-Chr7:5286666 5.99E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30989 PF00170 bZIP_1 3.80E-13 CL0018 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01943 K14432 - csv:101223043 742.651