Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01960 ATGGCGGTTTCATTTTCAGCAGCCACTGCCTTACATCTCCACCCTTCTTCTTCATCTTACACTCCCTTATTCAACCCTAGCCAGTTCCTCCGCCTCCGATCCCCTTCCCGCCGCACACTATTAATAGCTCATGCCCAATCGGAGCACCGTCAAACATGGCTTCCCGGCCTCGACCCGCCACCGCATCTCGACGGAACCCTTGCTGGGGATTTTGGATTCGACCCACTTGGGCTTGGCGAGGACCCACAAAGCTTGAAGTGGTACGTTCAAGCAGAGCTTGTTCATTGCCGCTTTGCCATGCTCGGCGTTTCTGGAGTTCTTCTCACTGATTTGCTTCGTGTTACAGGGATCAGTGAATTGCCAGTTTGGTATAATGCCGGTGCCGTTGAATATGGTTTTGCCAACAAACGAACTCTTTTCATTGTTCAGCTGCTTTTGATGGGGTTTGTGGAAACTAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAAGCTGCCTTTAAAGGTCTCGAGCCCGGATACCCTGGGGGTCCTCTGTTGAATCCTCTTGGCATTGCTAAAGATATCAAGAATGCTCATGACTGGAAACTCAAGGAGATTAAGAATGGACGGCTTGCAATGGTAGCCATGCTTGGGATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTTTCAAGCTCAAGTCCTTAA 780 48.08 MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18395695 18397045 + CsaV3_2G027790.1 Csa02g01960 520017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01960 259 SUPERFAMILY Chlorophyll a-b binding protein 47 256 - -
Csa02g01960 259 Gene3D Chlorophyll a/b binding protein domain 50 258 - -
Csa02g01960 259 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC 43 256 - -
Csa02g01960 259 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 43 256 IPR001344 GO:0009765|GO:0016020
Csa02g01960 259 Pfam Chlorophyll A-B binding protein 59 228 IPR022796 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01960 K08911 LHCA5; light-harvesting complex I chlorophyll a/b binding protein 5 - csv:101219846 491.115
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03255 Csa-Chr1:28713310 Csa02g01960 Csa-Chr2:18395695 3.08E-53 dispersed
Csa02g01960 Csa-Chr2:18395695 Csa05g02208 Csa-Chr5:24869407 1.74E-63 dispersed
Csa02g01960 Csa-Chr2:18395695 Csa01g00560 Csa-Chr1:3626647 7.47E-67 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g770 . . . . . . . . . Cmo12g00495 . . . Car12g00507 Sed11g0951 . Cpe07g00484 Bhi04g00351 Tan02g1837 Cmetu03g1729 . Hepe08g1279 . Lcy13g2071 Cla08g01570 Cam08g2067 Cec08g1644 Cco08g1778 Clacu08g1753 . Cre08g1539 Cone4ag1571 Cone7ag1381 . . . . . Cme03g02045 Blo17g00857 . . . . . . . . . . Cma12g00551 . . . . . . . . . . . . . . . . . . . Lsi08g01472 Csa02g01960 Chy03g01543 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012954 0 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28