Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01979 ATGAACGCTGTGGGGTTACTAGGGAGCTACATTTCAAAGGGTGTTTATACCGTTTCTGGGCCATTTCATCCGTTTGGTGGAGCTGTGGATATTGTTGTAGTCCAACAGCAGGATGGTAGTTTTAAATCATCACCTTGGTATGTAAAGTTTGGAAAATTTCAAGGTGTTTTGAAGACGAAGGAGAAGGTGGTCAGCATAGTTGTAAATGGGGTTGAAGCTAATTTTCAGATGTATTTAGATCATAAAGGAGAAGCTTATTTTTTGAGGGAAGTTGATGTTGAAGGAGAACCTGGATTATATCCTTCTTCTTCAGGTGATGAGATACTGCAGGAACTGGATGGTAGGAGGATCCTTAGTTCACAAAGTTGCTACTATAACACTAAGAGTTCAATAGATGGGATCGAGCAGAGTAATAATAATGGGAAGATAGTGACAAAAACTACCTCCCGGCGACAGATACTTGGATTTGTATGGGGTCGTAAATCAATGAAAGAAGATCTTCATGCGGGTACATCTGTTGCAAGGGTAGATTCTCTGGAGCGTGCTGAAATTGCAGCTGATCTTTTAGAGGTTAGGTGGTCTACCAATCTTCGCGCCCAAAAGCTTGAGAAAACGGATTCTTCTAAGTTTTCTTCCATTGACACTTCAGATGGCAAGGATGAGGAAAATTTGAGGAGAGATGATGAGAAAAGCCACGTGACATCAACTGTAAAAGCTAACATGGGAAATAGTATTGATAAAATCTTCGATAACAACACCTGCAACAAGCCCGTGACAAATGGCTCTCAATTAGAATCAGAAAAGCTAGAGCTTTCTATTGAGGTGACTAGAGAAATGTCAAGTTTAAACATCAAGGATCAAATGGTTGAAACTTCTATTATAGGGGAAAAGGTTTTTGACAGGACATATGAAGTGAAATATGCACCAATAGATATCCAACAGAGTGAAAAAGAGACTGTGCAGGCGATGGGAACCTTCGCTGAAAATGTAGATTCCAAGTCCCAAATTTCGTTGCTAATGGAGCACTTATCTGATGAAACAAATATTGCTTCTCATGTATTCAACATGTCTGAAGACAAGAGTGAATCCGATGCAGTGCAATCTTTAATGTTCTATGAAACTTCCAAGCAATCAATGTTGACAATGGATGATTCAAGGGTACTGACTCATGAAGTCTCCCATCTGACCAATGGAGGATCTGGGATCATTGATATTCAAACTGAGGGATTGCACTTGACAACTAAAGTTCATCTTGAGGATACAGAATCTAGTGTGGTAGCAGGAGATTTTGAAATAGAGACTGAAAAAGTTGAAGTCCTTGTGAACTCTTCTCAACAAGTGGATCATTGTATTAGTTCTGTTCATGAAGGCAACACAATGGATCAAGAAAAAACACCAACACTTGAAGCTTCCTATTCTCAAATTGTGTCCACAGAAGAAATGCCTGGTTCCGTTAAAGAATTGAAGTTTGATAGCACAGGTTCAAGTTTCTGCTCAGATTTTCAAGATGACAAAAGTGTAGATGGAAGTGTGACCAGCAAGTTCCAAAATTCTTTGAGTTCTATTGATAACAGAGTTGCAACAAAAGAAAGTCATATACTGCCGGCAACAAATTCAGATGATGAACAATTCCTTTTCAGTGATATTGATGTTCCAAAAACTGAGGTTAATGGGAGTATAGAGTCAGAAAGTCAACATTTCGATGATAAAGAAGATTATCCATTAGTATATCCAAGTAGCATTGATGAAGAGGATAGGTTTGCAAATAGAAGTTATGTGACAAGCAGTTCTGTAGACAGTCAAGAGATCTTCAATCAGAGGATTACAAGTCCCATCACAATTCCTCCAAGTCATCCAATTTCTAGTAAAGAAGTTGAGCGTCTGGCAGCTTCACTACCCAATATGCAGGCTAGGATTGATAATTCAATTGTCTGTAAGCTCAATCATCCTCTAAGCCATTCTGTGGACTCAAATTCAAAACCATTGAACTGGATGGAATTTTGTAAGGATAATGCAAGCTCCAAGACTGGTGGTGATGGAGAAGAGAAAGTGGCAGAGGATCGGTCAAAATCTGAAGAACCATGGGTTTCAGAAGAACGAAAAAATATTATTCGTAACTCTGGAGCAGGTAGTCCAGCAGAAGCAACTGTTGACCCAGTTGGAAATTGGAAACTTTGGCCTTTCTCTTTTAAAAGATCTAATTCTAGTAAAGGAACTCAATCAGCTGTTGATGGATGCATAGATTTTGATATTAAGAAGGATTCAGATAGAAATAATGGACTGGATGGAGAAGCAAGCATTGTTAAGCACAAGGTAGAGAAACAGATGGTTAAATCCCTCTCACCGACATCAGAGCAGCTGGCATCCTTAAATCTCAAGGAAGGGGGGAACACGATAACTTTCACATTTTACACTGCAGTGCTTGGAAAGCAGCAGGTTGATGCCCGGATTTATTTATGGAAATGGAATACTCGTGTAGTGATATCAGATGTGGATGGGACAATAACAAAGTCGGATGTTCTGGGTCAATTCATGCCCTTTGTTGGAATGGATTGGTCACAAACAGGTGTCACAAATTTATTTTCTGCTATTAAGGAAAATGGGTACCAATTGCTTTTTCTCAGTGCACGATCAATTTCTCAGGCGTATCACACCCGTCAATTTCTTTTCAACCTTAAACAAGATGGGAAGGCTTTACCAGAGGGGCCTGTTGTTATCTCCCCTGATGGGCTTTTCCCTTCACTATATCGTGAAGTTATTAGGCGGGCTCCTCATGAGTTCAAGATTGCTTGCTTGGAGAGAATTCGAGAACTATTTCCTCCAGATTGCAATCCATTTTATGCTGGGTTTGGAAACAGGGACACGGATGAATTTAGCTACCTTAAAGTTGGAATTCCAAAAGGAAAAATTTTCATTATTAATCCCAAGGGGGAGGTTGTTGTAAACCGCCGTGTCGACACGAAATCTTATACTTCTCTTCACACTCTTGTCAATGGGATGTTTCCTCCCATGACCTCATCCGAGCAGGAGGATTTCAATTCATGGAATTACTGGAAACTGCCACCTCCCTTGGTAGATTTTTAA 3084 39.85 MNAVGLLGSYISKGVYTVSGPFHPFGGAVDIVVVQQQDGSFKSSPWYVKFGKFQGVLKTKEKVVSIVVNGVEANFQMYLDHKGEAYFLREVDVEGEPGLYPSSSGDEILQELDGRRILSSQSCYYNTKSSIDGIEQSNNNGKIVTKTTSRRQILGFVWGRKSMKEDLHAGTSVARVDSLERAEIAADLLEVRWSTNLRAQKLEKTDSSKFSSIDTSDGKDEENLRRDDEKSHVTSTVKANMGNSIDKIFDNNTCNKPVTNGSQLESEKLELSIEVTREMSSLNIKDQMVETSIIGEKVFDRTYEVKYAPIDIQQSEKETVQAMGTFAENVDSKSQISLLMEHLSDETNIASHVFNMSEDKSESDAVQSLMFYETSKQSMLTMDDSRVLTHEVSHLTNGGSGIIDIQTEGLHLTTKVHLEDTESSVVAGDFEIETEKVEVLVNSSQQVDHCISSVHEGNTMDQEKTPTLEASYSQIVSTEEMPGSVKELKFDSTGSSFCSDFQDDKSVDGSVTSKFQNSLSSIDNRVATKESHILPATNSDDEQFLFSDIDVPKTEVNGSIESESQHFDDKEDYPLVYPSSIDEEDRFANRSYVTSSSVDSQEIFNQRITSPITIPPSHPISSKEVERLAASLPNMQARIDNSIVCKLNHPLSHSVDSNSKPLNWMEFCKDNASSKTGGDGEEKVAEDRSKSEEPWVSEERKNIIRNSGAGSPAEATVDPVGNWKLWPFSFKRSNSSKGTQSAVDGCIDFDIKKDSDRNNGLDGEASIVKHKVEKQMVKSLSPTSEQLASLNLKEGGNTITFTFYTAVLGKQQVDARIYLWKWNTRVVISDVDGTITKSDVLGQFMPFVGMDWSQTGVTNLFSAIKENGYQLLFLSARSISQAYHTRQFLFNLKQDGKALPEGPVVISPDGLFPSLYREVIRRAPHEFKIACLERIRELFPPDCNPFYAGFGNRDTDEFSYLKVGIPKGKIFIINPKGEVVVNRRVDTKSYTSLHTLVNGMFPPMTSSEQEDFNSWNYWKLPPPLVDF* 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18492342 18499982 - CsaV3_2G027980.1 Csa02g01979 520036

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01979 1027 SUPERFAMILY HAD-like 818 968 IPR036412 -
Csa02g01979 1027 SMART lns2 826 982 IPR031315 -
Csa02g01979 1027 Pfam lipin, N-terminal conserved region 12 94 IPR007651 -
Csa02g01979 1027 PANTHER LIPIN 1 1026 IPR026058 -
Csa02g01979 1027 Pfam LNS2 (Lipin/Ned1/Smp2) 778 1002 IPR013209 -
Csa02g01979 1027 MobiDBLite consensus disorder prediction 675 700 - -
Csa02g01979 1027 PANTHER GH19076P 1 1026 - -
Csa02g01979 1027 MobiDBLite consensus disorder prediction 206 234 - -
Csa02g01979 1027 MobiDBLite consensus disorder prediction 671 716 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01979 K15728 LPIN; phosphatidate phosphatase LPIN [EC:3.1.3.4] - csv:101221733 2033.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01979 Csa-Chr2:18492342 Csa04g01447 Csa-Chr4:14359646 2.87E-34 dispersed
Csa02g01979 Csa-Chr2:18492342 Csa03g03215 Csa-Chr3:29612998 5.37E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g778 Blo01g01534 . . . Bpe02g00423 . . Bma01g02284 Cmo05g00189 Cmo12g00473 . . . Car12g00499 Sed11g0970 . Cpe07g00473 Bhi04g00335 Tan02g1871 . . . . Lcy13g2049 Cla08g01556 Cam08g2051 Cec08g1628 Cco08g1761 Clacu08g1737 . Cre08g1523 . . Cone17ag0842 Cone20ag0186 . . . Cme03g02024 Blo17g00849 . Bda08g01343 . . Bpe05g00055 . . . . . Cma12g00531 Cma05g00190 Car05g00160 . Cpe11g00159 . . . . . . . . . . . . . . . Lsi08g01459 Csa02g01979 Chy03g01528 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006092 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38