Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01981 ATGGGGATCGCAAACCTCTCGTATGAGGAATGTCGTCGCAAGAGACTCGAAGAAAACAAGAAGCGAATGGAAGCCCTAAATTTACCCATGCTTTCTCAAGCTCTCATCGATTCTTCCCCTTCCAAGTCCTCACCTAGTAAGCTCACCAAGCCTCGCGTGACTCAGAAAGAACTCGTGGTGGTGAGGAGATCCAGTCGAGTAGCTAAACAGACAGCTCCTGTTTACGCCGAAGTTATTATTAATCGCGTGGTGATTCCTAGAAGGATCTCTAAAGCTAGAGATTTATCAAATCGAGTTTATGCTTCGGACGAAGCAAGAAAAGAAGCTTTTGAAAGAGCTGAACAATTGCAATCTGGGTTGGAGCCGAATTATCCCAGTTTTATAAAGTCAATGCTTCAGTCTCATGTTAGTGGTGGATTCTGGCTGGGTCTTCCTTCTCATTTCTGCAAGAATCGCCTTCCAAATCGTGATGGAGTAATGACTTTAATAGATGAAGATGGTGATGAGTATCCGACAATATATTTAGCACGAAAAACAGGACTTAGTGGCGGATGGAAGGGTTTTGCAGTCGCTCATAAGTTGGCAGATGGGGATGCTGTAATTTTTCAATTCATTAAACCTACAACATGCAAGGTACACATTCTCAGGACCAACAGTTCCAGAGAAGATAGCGATTCTAACAGTAGCTAA 690 43.33 MGIANLSYEECRRKRLEENKKRMEALNLPMLSQALIDSSPSKSSPSKLTKPRVTQKELVVVRRSSRVAKQTAPVYAEVIINRVVIPRRISKARDLSNRVYASDEARKEAFERAEQLQSGLEPNYPSFIKSMLQSHVSGGFWLGLPSHFCKNRLPNRDGVMTLIDEDGDEYPTIYLARKTGLSGGWKGFAVAHKLADGDAVIFQFIKPTTCKVHILRTNSSREDSDSNSS* 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18506838 18509255 - CsaV3_2G028000.1 Csa02g01981 520038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01981 229 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677
Csa02g01981 229 SUPERFAMILY DNA-binding pseudobarrel domain 121 218 IPR015300 -
Csa02g01981 229 CDD B3_DNA 125 216 IPR003340 GO:0003677
Csa02g01981 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN 2 222 - -
Csa02g01981 229 SMART B3_2 127 218 IPR003340 GO:0003677
Csa02g01981 229 Coils Coil 6 26 - -
Csa02g01981 229 Pfam B3 DNA binding domain 127 217 IPR003340 GO:0003677
Csa02g01981 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 222 IPR044837 -
Csa02g01981 229 Gene3D - 101 219 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01981 Csa-Chr2:18506838 Csa03g01866 Csa-Chr3:14378104 4.44E-43 dispersed
Csa02g01981 Csa-Chr2:18506838 Csa02g01982 Csa-Chr2:18510551 1.18E-94 tandem
Csa02g01981 Csa-Chr2:18506838 Csa07g00768 Csa-Chr7:5384625 1.26E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30990 PF02362 B3 1.10E-13 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01981 - - csv:101205473 417.927