Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01982 ATGCAGAAACAACTGGTGGTGGTGAGGAGGTCCAGTCGCGTAGCAAAGCAACCAACGCCTGTTTACGCTGAAGTTCTTGTCGATCGTGTGGCGATTCCTAGAAGGATCTCCAGAGCAAGAGATTTTTCAGCCCAGTTTTATGCTTCGGATGAAGCAAGAAAAAAAGCCTTTGAAAGAGCTCTTGAGTTACAATCTGGATTGGAGCCGAATTATCCCAGCTGTATAAAGTCGATGGTTCGGTCTCATGTTAGTGGTTGTTTCTGGCTGGGCCTTCCTTCTCATTTCTGCAAGACGCACCTTCCAAAGAATGATGGAGTAATGACTTTAATAGATGAAGATGGTGATGAGTATCCAATAATATATTTGGCACGAAAAACAGGTTTTAGTGGTGGATGGAAGGGTTTTTCAATTGCTCATAAGTTAAGTGATGGAGATGCTGTGGTTTTTCAACACATTAAACCTACAGCCTGCAAGAGAGGAGAGTGTTACCATCAACCATGTAGAAAAAGATGTTTAAAGATTGAAAACAGACTAATAAAAGGTGTACATCTTTAG 555 41.62 MQKQLVVVRRSSRVAKQPTPVYAEVLVDRVAIPRRISRARDFSAQFYASDEARKKAFERALELQSGLEPNYPSCIKSMVRSHVSGCFWLGLPSHFCKTHLPKNDGVMTLIDEDGDEYPIIYLARKTGFSGGWKGFSIAHKLSDGDAVVFQHIKPTACKRGECYHQPCRKRCLKIENRLIKGVHL* 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18510551 18513182 - CsaV3_2G028010.1 Csa02g01982 520039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01982 184 Gene3D - 49 159 IPR015300 -
Csa02g01982 184 ProSiteProfiles B3 DNA-binding domain profile. 74 170 IPR003340 GO:0003677
Csa02g01982 184 SMART B3_2 74 170 IPR003340 GO:0003677
Csa02g01982 184 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 3 158 - -
Csa02g01982 184 SUPERFAMILY DNA-binding pseudobarrel domain 68 155 IPR015300 -
Csa02g01982 184 CDD B3_DNA 72 155 IPR003340 GO:0003677
Csa02g01982 184 Pfam B3 DNA binding domain 75 153 IPR003340 GO:0003677
Csa02g01982 184 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 3 158 IPR044837 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01982 Csa-Chr2:18510551 Csa07g00768 Csa-Chr7:5384625 2.51E-51 dispersed
Csa02g01981 Csa-Chr2:18506838 Csa02g01982 Csa-Chr2:18510551 1.18E-94 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30991 PF02362 B3 2.80E-12 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01982 - - csv:101205233 324.709