Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02001 ATGCCTTCCTTTAACAAAAGCGCTTCAAATTCTCGGCTTCAACAGAAGGTACCTGATTCTGATTTTTTTGATTTTTCTGTTGGTCTACCGGAACCGTTTATTCAGCGGCGGCTTACCAGACAGAGGAAGCTCCGGCATCTTACGGATCAAGACGTTGGCTTTGAACACCCCCGATCGCTTCCTGATTCACCTGATATATCGGCAAAACCTAAATCGCCTCTTGGGGGTTCTGAACGTTGGTCCTCCTCGCCTTCGCCCCAGCCTTTGCCGTTGCCGGAGCTCTTTCCGGTTCGGAGCCCGGAGTTCGGTTCTAATTATGGTCAAGGGCGTGTTGGATCGCCTGTTGAAACTTCGGTCCGGAAGTGCTCTGATCATGCGACAACGAATGTAAGTAGAAGTTTTGGGCACAATCAAAGGCGGGTTGCTACAGATTTGACCCTGGAAGTTGTTGATGGCAATTCAAGGACTGGGGCTACCGCATTTACGAGCCCTCAAAGTCTCTCGGCGAATTCAGGGAAATTGAATCCGAATAAGGAGTTTCTTTTTGGTTGTTCGGATCAAACTCCAAACAACAAAGGCAGGGGATCCCCTACGCATCCGAGTGCTGAAAGGGGTAACTACAATTTGACACCTAAGAAATCGTCGTCAAAGAGTGCACCAACGAGCATTTTACCAAGTCCTGTTGTTAGCCCACGAAAATCATATAATGGAAATCATTTTGTTCCTGGCTTGAGTCACCATGAACATCAGGAATCTCCTTCCAATAATTCTCCTAAAGTACCACCCCTTAAAACTGCACTTAGTTCTCAGCCCTTTCCTCTCCATAGCCCGACAGCTCGAAGTTCCATAAGCAATTCCCGATCTCATAACGATATGACATTTCCCCTGCACACTAAGTTACAAAAAGATAATAGCATAGATCGGTCTGAAAGTCATGCTCATGTCAATGCCCACCCATTGCCCCTTCCTCCTCCATTAGTGGCCTCTTCACAAGCATCTGCACAGTCTCTTCCGTCAAATGTTCATCATGTTATTGAGAAGCCATTCATTTCATCGATGAAAGGTCAGTGGCAAAAAGGAAAGCTAATTGGGCGTGGTACGTTTGGAAGTGTTTATCTTGCAACCAACAGAGAAACTGGAGCTTTATGTGCAATGAAAGAAGTTGATCTCATTCCTGATGATCCTAAATCTGCTGAATGCATAAAGCAACTAGAGCAGGAAATTGAAGTTCTTAGTCATCTTAAACATCCGAATATTGTACAGTATTATGGAAGTGAAATAATTGGTGACTGTTTCTATATATATTTGGAGTACGTTTATCCTGGGTCAATAAATAAATATGTCCGTGAACGTTGTGGAGCCATTACTGAATCTATTGTTCGCAATTTCACTCGCCATATTCTATCTGGACTGGCTTACTTGCATAGCACAAAAACAATTCACAGAGATATCAAAGGTGCCAACTTGCTCGTTGATTCATCAGGCGTCGTCAAACTTGCCGATTTTGGGATGGCAAAACATCTGACAGGGCAGTATGATCTTTCTTTGAAGGGTAGTCCGTACTGGATGGCCCCAGAGGTCATAAAAGCTGCAATGTTGAAAGATGCCAACCCTGATCTTGCTTTGGCAGTTGACATTTGGAGTCTGGGTTGCACCATAATTGAAATGCTGAATGGAAAACCTCCTTGGTGTGAGTTTGAAGGGCATCAAGTTATGTTCAAGGTGTTGAATAAAACCCCACCTATCCCAGAAAAGCTATCTCCTGAAGGGAAAGACTTCCTCCAGTGTTGCTTTCAGAGGAATCCAGCTGACAGACCAACTGCCATGGTGCTCCTTGACCATCCTTTCTTAAGATCCTCAAGTGACTCGAATGCTTCGATCCCAACGTCAGCATTTTCAACAATGAATCTCTTGGAAAAATTGTTGAGTCCGAAGGATCCCCTTAATCCTAAAGGAGACCAGGCACAAAACTCTTCTGGAACTTTGACTTCAAATGATTATTTGTCGTGCCGTAGCCCTTCAACAAACATTTCAAGCAATGTTCCTGCAAGTGCAGTCGCCAACCACCACTTTTCTATTTCAAGGACTCATAAAAGGGAAGTGCCGCACCTCTGA 2115 44.49 MPSFNKSASNSRLQQKVPDSDFFDFSVGLPEPFIQRRLTRQRKLRHLTDQDVGFEHPRSLPDSPDISAKPKSPLGGSERWSSSPSPQPLPLPELFPVRSPEFGSNYGQGRVGSPVETSVRKCSDHATTNVSRSFGHNQRRVATDLTLEVVDGNSRTGATAFTSPQSLSANSGKLNPNKEFLFGCSDQTPNNKGRGSPTHPSAERGNYNLTPKKSSSKSAPTSILPSPVVSPRKSYNGNHFVPGLSHHEHQESPSNNSPKVPPLKTALSSQPFPLHSPTARSSISNSRSHNDMTFPLHTKLQKDNSIDRSESHAHVNAHPLPLPPPLVASSQASAQSLPSNVHHVIEKPFISSMKGQWQKGKLIGRGTFGSVYLATNRETGALCAMKEVDLIPDDPKSAECIKQLEQEIEVLSHLKHPNIVQYYGSEIIGDCFYIYLEYVYPGSINKYVRERCGAITESIVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQYDLSLKGSPYWMAPEVIKAAMLKDANPDLALAVDIWSLGCTIIEMLNGKPPWCEFEGHQVMFKVLNKTPPIPEKLSPEGKDFLQCCFQRNPADRPTAMVLLDHPFLRSSSDSNASIPTSAFSTMNLLEKLLSPKDPLNPKGDQAQNSSGTLTSNDYLSCRSPSTNISSNVPASAVANHHFSISRTHKREVPHL* 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18601356 18605309 - CsaV3_2G028200.1 Csa02g02001 520058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02001 704 Pfam Protein kinase domain 358 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02001 704 MobiDBLite consensus disorder prediction 650 667 - -
Csa02g02001 704 MobiDBLite consensus disorder prediction 155 334 - -
Csa02g02001 704 MobiDBLite consensus disorder prediction 1 17 - -
Csa02g02001 704 MobiDBLite consensus disorder prediction 1 20 - -
Csa02g02001 704 MobiDBLite consensus disorder prediction 46 95 - -
Csa02g02001 704 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 694 - -
Csa02g02001 704 Gene3D Transferase(Phosphotransferase) domain 1 354 643 - -
Csa02g02001 704 MobiDBLite consensus disorder prediction 248 300 - -
Csa02g02001 704 SUPERFAMILY Protein kinase-like (PK-like) 352 631 IPR011009 -
Csa02g02001 704 PANTHER - 1 694 - -
Csa02g02001 704 SMART serkin_6 357 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02001 704 MobiDBLite consensus disorder prediction 643 667 - -
Csa02g02001 704 ProSiteProfiles Protein kinase domain profile. 357 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02001 704 ProSitePatterns Protein kinases ATP-binding region signature. 363 386 IPR017441 GO:0005524
Csa02g02001 704 MobiDBLite consensus disorder prediction 155 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02001 Csa-Chr2:18601356 Csa05g00475 Csa-Chr5:3086912 1.50E-108 dispersed
Csa03g01285 Csa-Chr3:9835135 Csa02g02001 Csa-Chr2:18601356 1.29E-20 transposed
Csa05g01522 Csa-Chr5:17767126 Csa02g02001 Csa-Chr2:18601356 1.01E-73 transposed
Csa02g02001 Csa-Chr2:18601356 Csa06g02922 Csa-Chr6:25325579 1.99E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77915 PF00069 Pkinase 1.80E-67 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02001 - - csv:101219854 1388.63