Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02005 ATGTCCAATAGCAAAAGGGATGAGTGGAAGGAAGTTACGAATGGAGAACAAATGAGATCACAATCCGATGTGGCTTTGAGCATTGCGAAACGGCTTCTCCAAGACAATGTAAAGAACTCCAATATTGTGTTTTCGCCATTGTCAATCCAAGTTTTGCTGAGTCTTATTGGTGCTGGTTGTAATGGCCCCATTCTTGATCAGCTTCTGTCCTTCCTGAAAGCAAACTCCATTGACCAACTCAACCACTTTGGTTCGTTTGTAACATCCAATCTCTTGGCCGACGCCTCTCGCACCGGCGGACCTAAACTCTTATTTGCCAATGGACTTTGGCTCAATCAATCACACTCTCCCAAGCATTCTTTCAAACATATTGTCGAAACTTATTATAAAGCCACCCTCCGTCAAGCCGATTTTCACACTAAGGGTGAAGAAGTGGTTTTGGAAGTGAACTCATGGGTTAAAGACAAAACTAAAGGACTCATTACCGATATTCTTCTCCCCGGATCAGTTGATAGACTAACTCAGATCATTCTTGTAAATGCACTTTACTTCAAAGGGGTTTGGACAAATAAATTTAATGATTCAGAAACAAAAAAGGAGGATTTTTACCTAGTTGATGGGAGTTCCATTAAGACCCCTTTCATGAGCAGCAGTAAGGATCAATATATAGCTGCATACGATGGGTTTAAAGTTCTTACAATGCCGTATCGACAAGGCCAAGATAAAGATCGTCGTTTCTCCATGTGTATCTTTCTCCCAGATGCCAAAGATGGATTGGCATCATTGATCGAAAAGGTAGACTCTGAGTCCGGGTTCATGGATCGCCACATTCCGCGTAAGAAAGTTGAAGTGGGTGAATTCAAAATTCCCAAGTTCAAAGTGAGTTATGAATTTGAAGTTTCGGATGTGTTAAAGAAGTTGGGATTGGTTTTACCTTTTGAAGAAAGGAGTTTATTAGAAATGGTGGAGACAGAAACAGGTGAACTGACATTTGTTTCAAGCATTTTTCACAAGTCGATCATTGAAGTCAACGAAAAGGGGACTGAAGCTGCAGCTGCTTCTGTTTATTTATGCGGTTTAACTTGTTCGATGGAGTGTGTAAAGAGAATAAACTTTGTTGCTGACCATCCCTTCTTGTTTGCAATCAGAGAAAACGTAACAGGAACTTTGCTTTTTGTTGGCCAAGTGCTACATCCTACTCTGTGA 1206 40.88 MSNSKRDEWKEVTNGEQMRSQSDVALSIAKRLLQDNVKNSNIVFSPLSIQVLLSLIGAGCNGPILDQLLSFLKANSIDQLNHFGSFVTSNLLADASRTGGPKLLFANGLWLNQSHSPKHSFKHIVETYYKATLRQADFHTKGEEVVLEVNSWVKDKTKGLITDILLPGSVDRLTQIILVNALYFKGVWTNKFNDSETKKEDFYLVDGSSIKTPFMSSSKDQYIAAYDGFKVLTMPYRQGQDKDRRFSMCIFLPDAKDGLASLIEKVDSESGFMDRHIPRKKVEVGEFKIPKFKVSYEFEVSDVLKKLGLVLPFEERSLLEMVETETGELTFVSSIFHKSIIEVNEKGTEAAAASVYLCGLTCSMECVKRINFVADHPFLFAIRENVTGTLLFVGQVLHPTL* 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18617246 18618525 - CsaV3_2G028240.1 Csa02g02005 520062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02005 401 Pfam Serpin (serine protease inhibitor) 20 399 IPR023796 -
Csa02g02005 401 SUPERFAMILY Serpins 18 399 IPR036186 -
Csa02g02005 401 CDD serpinP_plants 19 399 - -
Csa02g02005 401 SMART serpin2 26 399 IPR023796 -
Csa02g02005 401 Gene3D - 188 394 IPR042185 -
Csa02g02005 401 PANTHER SERPIN-ZX-LIKE 24 399 - -
Csa02g02005 401 Gene3D Antithrombin, subunit I, domain 2 39 345 IPR042178 -
Csa02g02005 401 PANTHER SERINE PROTEASE INHIBITOR, SERPIN 24 399 IPR000215 GO:0004867|GO:0005615
Csa02g02005 401 ProSitePatterns Serpins signature. 372 382 IPR023795 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02005 K13963 SERPINB; serpin B - csv:101219609 788.489
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g02005 Csa04g02371 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02003 Csa-Chr2:18610709 Csa02g02005 Csa-Chr2:18617246 1.03E-167 dispersed
Csa02g02005 Csa-Chr2:18617246 Csa04g02371 Csa-Chr4:24064353 3.97E-107 dispersed
Csa02g02004 Csa-Chr2:18613943 Csa02g02005 Csa-Chr2:18617246 1.22E-149 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g831 . . . . . . . . Cmo05g00215 . . . . . Sed08g1817 . . Bhi04g00301 Tan02g1904 Cmetu03g1500 . Hepe10g0696 . Lcy13g2026 Cla08g01534 Cam08g2027 Cec08g1603 Cco08g1738 Clacu08g1716 . Cre08g1499 . . Cone17ag1302 . . Csa04g02371 . Cme03g02000 Blo17g00830 . Bda08g01319 . . Bpe05g00068 . . . . . . Cma05g00209 . . Cpe11g00174 . . . . . . . . . . . . . . . Lsi08g01436 Csa02g02005 Chy07g00100 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000825 2 1 6 2 1 2 0 2 2 4 1 2 3 4 4 7 2 3 2 2 4 1 2 5 5 4 4 7 5 1 90