Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02010 ATGTTTATCAATAATATGGACTACTCCAACAACAACAACAACACCACCACCCCACCCCCGCCATTGCCGGACCTTTCCCTGCACATAAGTCCACCCTCGGGTTCCGGCAATCATTATTTCAACCACCACCACCACCACCATCAACCTCAAATCTTTAGCAACCATTTCAAAAGAGGCCCAAAAATGGGATTTGGATCAATTAAAAGAAGCATTAGAGCTCCAAGAATGAGATGGACTACTACTCTCCATGCCCATTTTGTCCACGCCGTTCAGCTCCTTGGTGGCCATGAAAGGGCAACACCAAAATCAGTATTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAAGCCACTGACTCAGCCATGAAGAACCAAAGGCAAGATATTGATGGAAGTGGTGTTTCAAATTGTGAGATTTCTAATAATCCATCACTTACAATGTGGAAAAGCCCTAATCAAAAAATGAAGTTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGAGCAGATGGAATCAATTTTGCAACAACACTATTGGAAACAACCAGCAGCAAGAGAAGGACAGACACAATGGAAATGCAAATATGAAAATCTCGAGTGGTGTGAAGAATCACAATAATAATAATAATAATCTCAATTTAGATTTCACTTTGGGATGCCCTAATTCTCTAACAATCCATTCTAACCCTCACTCTTCATCTACTGAACTTCCTCTTCTCAAATGCTAA 783 40.74 MFINNMDYSNNNNNTTTPPPPLPDLSLHISPPSGSGNHYFNHHHHHHQPQIFSNHFKRGPKMGFGSIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKATDSAMKNQRQDIDGSGVSNCEISNNPSLTMWKSPNQKMKLFCSSMETNQEMTSRWNQFCNNTIGNNQQQEKDRHNGNANMKISSGVKNHNNNNNNLNLDFTLGCPNSLTIHSNPHSSSTELPLLKC* 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18650102 18653082 + CsaV3_2G028290.1 Csa02g02010 520067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02010 260 MobiDBLite consensus disorder prediction 133 153 - -
Csa02g02010 260 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 74 127 IPR006447 GO:0003677
Csa02g02010 260 MobiDBLite consensus disorder prediction 1 15 - -
Csa02g02010 260 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 44 243 IPR044847 GO:0000976|GO:0006355|GO:0010158
Csa02g02010 260 MobiDBLite consensus disorder prediction 1 21 - -
Csa02g02010 260 Pfam Myb-like DNA-binding domain 75 126 IPR001005 -
Csa02g02010 260 SUPERFAMILY Homeodomain-like 71 128 IPR009057 -
Csa02g02010 260 Gene3D - 73 130 - -
Csa02g02010 260 MobiDBLite consensus disorder prediction 198 225 - -
Csa02g02010 260 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 44 243 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g02010 Csa03g04154 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02010 Csa-Chr2:18650102 Csa03g04582 Csa-Chr3:39874462 3.19E-37 dispersed
Csa05g00934 Csa-Chr5:7494956 Csa02g02010 Csa-Chr2:18650102 3.93E-22 transposed
Csa06g03708 Csa-Chr6:29652115 Csa02g02010 Csa-Chr2:18650102 1.09E-20 transposed
Csa02g02010 Csa-Chr2:18650102 Csa03g04154 Csa-Chr3:36504113 5.06E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30995 PF00249 Myb_DNA-binding 9.80E-06 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02010 - - csv:101219131 473.011