Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02011 ATGAAATTTGGGAATCTCTTCACGGATAATACCGATCTAAAAATAGACGACGATGGTGATTTTCCGACGCCAACCAGCGACGAGTCTCCGCCGATATTTTCACCGTGGAATCAGACTTATCCCTTTCTAAAATCTCCCTGTTTTTCCGAATTCCAAAACGGCTTCGTTCTTCACCGGAATAATAATTCTCTCATTGGGTCTCTTGTTCGTGAGGAAGGTCACGTGTACTCGCTAGCCACTGCCGGTGAGCTTCTTTACACCGGCTCCGACAGCAAAAACATTCGGGTATGGAAAAATCTCAAGGAATTTACTGGGTTTAAATCAAGCAGTGGATTGGTTAAGGCAATTATAATCTCCGGCGAGAAGATCTTCACCGGTCACCAGGACGGAAAAATTCGGGTCTGGAAAGTGGCACCGAAAAACCCAAGCGGCGGTCACCGACGGGCTGGGACGTTACCGGCGCTGAGAGATATTTTAAGAAGCTCCATGAACCCTCAAAACTACGTCGTTGTGGGACGGAATCGGAGCCGGCTTTGGTTTAAACACGCCGATGCAGTTTCGTGCTTGTGCTTGAGTGAAGATAAGACGTTGTTGTATTCTTCTTCTTGGGATAAAACTTTGAAAGTTTGGAGAATTTCAGATTCCAAGTGCCTCGAATCACTTACCGTTCATGACGATGCAGTGAATGCCGTCGTCGCAGCTTCAAATGGTTTGGTCATCACTGGCTCGGCCGATGGCACCGCTAAGGTATGGCGGAGACAGCATGAAGAAGAGAACGACGCAACAAAACACGTACTGGACCAAACGCTATTGAAGCAAGACAGTGCAGTTACAGCGGTGGCCGTCAACGCCGCCGGCACAGTAGTTTACTGTGGATCTTCCGACGGATTGGTCAACTTCTGGGAGCGAGAAAAGCGGTTGACATACGGTGGAGCCCTCAAGGGCCACAACCTAGCAGTTCTCTGCCTTGCTGCCGCCGGGAACAGCATGGTACTGAGCGGCGGCGCCGATAAAACCATATGCGTGTGGCGGAGGGATGGGCCTTTCCACACGTGCGTATCGGTGCTGACGGGTCACACCGGACCGGTTAAATGCTTAGCCGTGGAGGAAGATCGCGTCCGCTGCCCGGATAAACGGGAAGGTCAGCGGTGGATTGCGTACAGTGGTAGCCTGGACAGATCGGTGAAGGTGTGGGGAATTTCCGACGGGGTCGGTGGGTGA 1221 51.43 MKFGNLFTDNTDLKIDDDGDFPTPTSDESPPIFSPWNQTYPFLKSPCFSEFQNGFVLHRNNNSLIGSLVREEGHVYSLATAGELLYTGSDSKNIRVWKNLKEFTGFKSSSGLVKAIIISGEKIFTGHQDGKIRVWKVAPKNPSGGHRRAGTLPALRDILRSSMNPQNYVVVGRNRSRLWFKHADAVSCLCLSEDKTLLYSSSWDKTLKVWRISDSKCLESLTVHDDAVNAVVAASNGLVITGSADGTAKVWRRQHEEENDATKHVLDQTLLKQDSAVTAVAVNAAGTVVYCGSSDGLVNFWEREKRLTYGGALKGHNLAVLCLAAAGNSMVLSGGADKTICVWRRDGPFHTCVSVLTGHTGPVKCLAVEEDRVRCPDKREGQRWIAYSGSLDRSVKVWGISDGVGG* 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18654351 18656797 - CsaV3_2G028300.1 Csa02g02011 520068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02011 406 MobiDBLite consensus disorder prediction 1 30 - -
Csa02g02011 406 Gene3D - 52 153 IPR015943 GO:0005515
Csa02g02011 406 SMART WD40_4 306 344 IPR001680 GO:0005515
Csa02g02011 406 SMART WD40_4 263 302 IPR001680 GO:0005515
Csa02g02011 406 SMART WD40_4 99 136 IPR001680 GO:0005515
Csa02g02011 406 SMART WD40_4 214 252 IPR001680 GO:0005515
Csa02g02011 406 SMART WD40_4 173 211 IPR001680 GO:0005515
Csa02g02011 406 SMART WD40_4 61 98 IPR001680 GO:0005515
Csa02g02011 406 SMART WD40_4 349 399 IPR001680 GO:0005515
Csa02g02011 406 PANTHER PROTEIN JINGUBANG 26 402 - -
Csa02g02011 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 220 IPR001680 GO:0005515
Csa02g02011 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 343 IPR001680 GO:0005515
Csa02g02011 406 SUPERFAMILY WD40 repeat-like 63 402 IPR036322 GO:0005515
Csa02g02011 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 179 216 - -
Csa02g02011 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 251 - -
Csa02g02011 406 Gene3D - 264 404 IPR015943 GO:0005515
Csa02g02011 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 251 IPR001680 GO:0005515
Csa02g02011 406 Gene3D - 168 263 IPR015943 GO:0005515
Csa02g02011 406 Pfam WD domain, G-beta repeat 182 210 IPR001680 GO:0005515
Csa02g02011 406 Pfam WD domain, G-beta repeat 351 398 IPR001680 GO:0005515
Csa02g02011 406 Pfam WD domain, G-beta repeat 216 251 IPR001680 GO:0005515
Csa02g02011 406 Pfam WD domain, G-beta repeat 97 136 IPR001680 GO:0005515
Csa02g02011 406 Pfam WD domain, G-beta repeat 313 343 IPR001680 GO:0005515
Csa02g02011 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 302 IPR001680 GO:0005515
Csa02g02011 406 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Csa02g02011 406 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Csa02g02011 406 PRINTS G protein beta WD-40 repeat signature 239 253 IPR020472 -
Csa02g02011 406 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 26 402 IPR045182 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02011 - - - csv:101222126 823.542
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g02011 Csa03g04173 CCT
Csa02g02011 Csa03g04173 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02011 Csa-Chr2:18654351 Csa07g00816 Csa-Chr7:5720257 1.06E-163 dispersed
Csa02g02011 Csa-Chr2:18654351 Csa03g04173 Csa-Chr3:36627485 4.72E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g860 Blo01g01543 Blo12g00920 Bda01g00554 Bda03g00243 Bpe02g00412 . Bma04g00193 . Cmo05g00221 Cmo12g00448 . Cma09g00180 . . Sed10g2068 . . Bhi04g00295 Tan02g0857 Cmetu01g0434 . Hepe02g0551 . . Cla08g01527 Cam08g2019 Cec08g1593 Cco08g1730 Clacu08g1708 . Cre08g1489 . . . . . Csa03g04173 Chy04g00544 . Blo17g00826 . Bda08g01311 . . . . Bma05g00099 . Cmo01g01944 Cmo09g00176 Cma12g00505 Cma05g00214 . . . . . . . . . . . Cla05g01970 Cam05g2121 Cec05g2132 Cco05g2184 Clacu05g2109 Cmu05g1985 Cre05g2104 . Csa02g02011 Chy03g01498 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013246 2 1 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 2 1 0 27